fix: repair merged README remnants and note links after the master rebase

Apply the rename pass to READMEs and docs the master sweep rewrote, fix
PTC mode anchors and the renamed-note links in the spill READMEs, and
regenerate the doc graphs.

docs/capability-seams.i18n.yaml

@@ -2,5 +2,5 @@
 # side as of the last confirmed-consistent state. Both languages carry equal authority;
 # after editing either side, bring the other along and re-record with:
 #   pnpm run verify-translation-pairing --write docs/capability-seams.md
-capability-seams.md: 2ff2c3641f163c46ba19616bf35d60df82b3c748
-capability-seams.zh.md: 3cb636d0a997f4c36905f6434d7f2b2d0a22dbd8
+capability-seams.md: 5c3ba40df35f40e211de2bf90037f998eeb5a15d
+capability-seams.zh.md: 47402e1b6d9514a77e8fff6c4f0d0a8bbb34586d

docs/capability-seams.md

@@ -494,7 +494,7 @@ flowchart LR
 | `ctx.sessionReferenceResolver` | `core` | [`session-reference`](../packages/context/session-reference) | - | - | - | Projects bounded current-surface conversation snapshots into durable untrusted message context; host adapters own mention syntax. |
 | `ctx.sessionTitle` | `seam` | [`session-title`](../packages/session/session-title) | [`session-title-first-prompt-llm`](../packages/session/session-title-first-prompt-llm), [`session-title-all-prompts-llm`](../packages/session/session-title-all-prompts-llm) | - | - | Owns the deterministic fallback, latest-title fold, and sole optional asynchronous provider registration. |
 | `ctx.systemPrompt` | `core` | [`system-prompt`](../packages/core/system-prompt) | - | [`agent-loop`](../packages/core/agent-loop), [`tools`](../packages/core/tools), [`tool-fs`](../packages/fs/tool-fs), [`tool-terminal`](../packages/terminal/tool-terminal), [`tool-web`](../packages/web/tool-web) | - | Collects prompt sections and model-facing tool schemas for each step. |
-| `ctx.tools` | `core` | [`tools`](../packages/core/tools) | - | [`agent-loop`](../packages/core/agent-loop), [`tool-ask-user`](../packages/interaction/tool-ask-user), [`tool-bash`](../packages/shell/tool-bash), [`tool-cordis`](../packages/extensions/tool-cordis), [`tool-fs`](../packages/fs/tool-fs), [`tool-terminal`](../packages/terminal/tool-terminal), [`tool-skill`](../packages/skill/tool-skill), [`tool-subagent`](../packages/subagent/tool-subagent), [`tool-todo`](../packages/todo/tool-todo), [`tool-web`](../packages/web/tool-web) | - | Registers capabilities, owns Code Mode transport, and routes calls through pre-policy, monotonic guards, around dispatch, post-policy, and final-result observation. |
+| `ctx.tools` | `core` | [`tools`](../packages/core/tools) | - | [`agent-loop`](../packages/core/agent-loop), [`tool-ask-user`](../packages/interaction/tool-ask-user), [`tool-bash`](../packages/shell/tool-bash), [`tool-cordis`](../packages/extensions/tool-cordis), [`tool-fs`](../packages/fs/tool-fs), [`tool-terminal`](../packages/terminal/tool-terminal), [`tool-skill`](../packages/skill/tool-skill), [`tool-subagent`](../packages/subagent/tool-subagent), [`tool-todo`](../packages/todo/tool-todo), [`tool-web`](../packages/web/tool-web) | - | Registers capabilities, owns PTC mode transport, and routes calls through pre-policy, monotonic guards, around dispatch, post-policy, and final-result observation. |
 | `ctx.userQuestions` | `seam` | [`user-questions`](../packages/interaction/user-questions) | - | [`tool-ask-user`](../packages/interaction/tool-ask-user) | - | UI front ends provide the active human-answer provider; tool-ask-user pauses a tool call on the provider-neutral ask() promise. |
 | `ctx.planMode` | `core` | [`plan-mode`](../packages/plan/plan-mode) | - | - | - | Folds logged plan/mode state, flushes user selections at turn boundaries, renders deployment-owned guidance, registers /plan, and keeps the plan-exit schema stable across transitions. |
 | `ctx.agentPresets` | `core` | [`agent-presets`](../packages/preset/agent-presets) | - | - | - | Discovers preset directories over trusted and user-authored roots and mounts one preset cordis.yml under an agent scope during creation, rejecting a row that never activates or that publishes into the root service realm. |
@@ -515,7 +515,7 @@ flowchart LR
 | `ctx.sandboxPolicy` | `core` | [`sandbox-policy`](../packages/sandbox/sandbox-policy) | - | [`bash-sandbox`](../packages/shell/bash-sandbox), [`fs-sandbox`](../packages/fs/fs-sandbox), [`terminal-bash`](../packages/terminal/terminal-bash) | - | The one home for the deployment default mode + workspace root; only the sandboxed executor and provider read the service (the tool layers use the pure `sandbox/mode` fold it also exports). Both enforcing families read it so bash and fs cannot confine to different roots. |
 | `ctx.approval` | `seam` | [`user-approval`](../packages/interaction/user-approval) | - | [`tools`](../packages/core/tools), [`tool-bash`](../packages/shell/tool-bash), [`acp`](../packages/acp/acp) | - | One-shot permission decisions dispatched over the `approval/request` waterfall; answerers are listeners (the ACP bridge for its own agents), absence fails closed to `unavailable`. |
 | `ctx.permissionPresets` | `core` | [`permission-presets`](../packages/interaction/permission-presets) | - | - | - | User-facing preset table (`workspace-write`/`danger-full-access`) bundling the sandbox-mode and approval-policy knobs; a switch writes one `permission/preset` event through to both knob events. |
-| `ctx.codeRuntime` | `seam` | [`code-runtime`](../packages/code-runtime/code-runtime) | [`code-runtime-worker-thread`](../packages/code-runtime/code-runtime-worker-thread) | [`tools`](../packages/core/tools) | - | Runs one model-written program against host-provided async bindings; backends differ by substrate and language (the tool registry consumes it for Code Mode). |
+| `ctx.codeRuntime` | `seam` | [`code-runtime`](../packages/code-runtime/code-runtime) | [`code-runtime-worker-thread`](../packages/code-runtime/code-runtime-worker-thread) | [`tools`](../packages/core/tools) | - | Runs one model-written program against host-provided async bindings; backends differ by substrate and language (the tool registry consumes it for PTC mode). |
 | `ctx.fs` | `seam` | [`fs`](../packages/fs/fs) | [`fs-local`](../packages/fs/fs-local), [`fs-sandbox`](../packages/fs/fs-sandbox), [`fs-e2b`](../packages/e2b/fs-e2b) | [`tool-fs`](../packages/fs/tool-fs) | [`fs-observation-policy`](../packages/fs/fs-observation-policy) | tool-fs executes read/write/edit through ctx.fs; fs-sandbox fences mutations by the shared sandbox mode; fs-observation-policy contributes observed-state checks through the fs/* event gate. |
 | `ctx.compaction` | `seam` | [`compaction`](../packages/compaction/compaction) | [`compaction-basic`](../packages/compaction/compaction-basic) | [`compaction-basic`](../packages/compaction/compaction-basic) | - | The basic backend consumes post-step pressure and request-error recovery events; there is no model-facing compact tool. |
 | `ctx.subagents` | `seam` | [`subagent`](../packages/subagent/subagent) | [`subagent-spawn-in-process`](../packages/subagent/subagent-spawn-in-process), [`subagent-fork-in-process`](../packages/subagent/subagent-fork-in-process), [`subagent-acp`](../packages/subagent/subagent-acp), [`subagent-codex`](../packages/subagent/subagent-codex), [`subagent-claude-code`](../packages/subagent/subagent-claude-code), [`subagent-dsh-sdk`](../packages/subagent/subagent-dsh-sdk) | [`tool-subagent`](../packages/subagent/tool-subagent), [`tool-subagent-control`](../packages/subagent/tool-subagent-control), [`tool-ralph`](../packages/workflow/tool-ralph) | - | Providers implement transports; the service also owns optional Activation-based continuation orchestration, tool-subagent selects one-shot or continuable delegation, tool-subagent-control delivers follow-ups, and tool-ralph requires one fresh structured-output route. |

docs/capability-seams.zh.md

@@ -496,7 +496,7 @@ flowchart LR
 | `ctx.sessionReferenceResolver` | `core` | [`session-reference`](../packages/context/session-reference) | - | - | - | 将当前表层中有界的对话快照投影为持久但不可信的消息上下文；Host 适配器负责提及语法。 |
 | `ctx.sessionTitle` | `seam` | [`session-title`](../packages/session/session-title) | [`session-title-first-prompt-llm`](../packages/session/session-title-first-prompt-llm), [`session-title-all-prompts-llm`](../packages/session/session-title-all-prompts-llm) | - | - | 负责确定性回退、最新标题折叠区，以及唯一的可选异步提供方注册。 |
 | `ctx.systemPrompt` | `core` | [`system-prompt`](../packages/core/system-prompt) | - | [`agent-loop`](../packages/core/agent-loop), [`tools`](../packages/core/tools), [`tool-fs`](../packages/fs/tool-fs), [`tool-terminal`](../packages/terminal/tool-terminal), [`tool-web`](../packages/web/tool-web) | - | 为每个步骤收集提示词各部分和面向模型的工具 schema。 |
-| `ctx.tools` | `core` | [`tools`](../packages/core/tools) | - | [`agent-loop`](../packages/core/agent-loop), [`tool-ask-user`](../packages/interaction/tool-ask-user), [`tool-bash`](../packages/shell/tool-bash), [`tool-cordis`](../packages/extensions/tool-cordis), [`tool-fs`](../packages/fs/tool-fs), [`tool-terminal`](../packages/terminal/tool-terminal), [`tool-skill`](../packages/skill/tool-skill), [`tool-subagent`](../packages/subagent/tool-subagent), [`tool-todo`](../packages/todo/tool-todo), [`tool-web`](../packages/web/tool-web) | - | 注册能力，负责 Code Mode 传输，并让调用依次经过策略前处理、单调守卫、环绕分派、策略后处理和最终结果观测。 |
+| `ctx.tools` | `core` | [`tools`](../packages/core/tools) | - | [`agent-loop`](../packages/core/agent-loop), [`tool-ask-user`](../packages/interaction/tool-ask-user), [`tool-bash`](../packages/shell/tool-bash), [`tool-cordis`](../packages/extensions/tool-cordis), [`tool-fs`](../packages/fs/tool-fs), [`tool-terminal`](../packages/terminal/tool-terminal), [`tool-skill`](../packages/skill/tool-skill), [`tool-subagent`](../packages/subagent/tool-subagent), [`tool-todo`](../packages/todo/tool-todo), [`tool-web`](../packages/web/tool-web) | - | 注册能力，负责 PTC mode 传输，并让调用依次经过策略前处理、单调守卫、环绕分派、策略后处理和最终结果观测。 |
 | `ctx.userQuestions` | `seam` | [`user-questions`](../packages/interaction/user-questions) | - | [`tool-ask-user`](../packages/interaction/tool-ask-user) | - | UI 前端提供当前生效的人工回答提供方；tool-ask-user 在提供方无关的 ask() promise 上暂停工具调用。 |
 | `ctx.planMode` | `core` | [`plan-mode`](../packages/plan/plan-mode) | - | - | - | 折叠已记录的计划／模式状态，在轮次边界刷新用户选择，渲染由部署方拥有的指导信息，注册 /plan，并在状态转换期间保持计划退出 schema 稳定。 |
 | `ctx.agentPresets` | `core` | [`agent-presets`](../packages/preset/agent-presets) | - | - | - | 在受信任根目录与用户创作根目录上发现 preset 目录，并在创建期把一份 preset cordis.yml 挂载到 agent 作用域之下，拒绝始终未激活或向根服务 realm 发布服务的行。 |
@@ -517,7 +517,7 @@ flowchart LR
 | `ctx.sandboxPolicy` | `core` | [`sandbox-policy`](../packages/sandbox/sandbox-policy) | - | [`bash-sandbox`](../packages/shell/bash-sandbox), [`fs-sandbox`](../packages/fs/fs-sandbox), [`terminal-bash`](../packages/terminal/terminal-bash) | - | 统一保存部署默认模式和工作区根目录；只有沙箱执行器和提供方读取该服务（工具层使用它同时导出的纯 `sandbox/mode` 折叠区）。两类强制执行组件都读取该服务，因此 bash 与 fs 不会限制到不同的根目录。 |
 | `ctx.approval` | `seam` | [`user-approval`](../packages/interaction/user-approval) | - | [`tools`](../packages/core/tools), [`tool-bash`](../packages/shell/tool-bash), [`acp`](../packages/acp/acp) | - | 一次性权限决策通过 `approval/request` waterfall（瀑布式事件）分派；回答方是监听器（即 ACP 为自身 agent 提供的桥接），没有回答方时以 `unavailable` 关闭失败。 |
 | `ctx.permissionPresets` | `core` | [`permission-presets`](../packages/interaction/permission-presets) | - | - | - | 面向用户的预设表（`workspace-write`／`danger-full-access`），将沙箱模式与审批策略选项组合在一起；一次切换会写入一个 `permission/preset` 事件，并贯通到两个选项事件。 |
-| `ctx.codeRuntime` | `seam` | [`code-runtime`](../packages/code-runtime/code-runtime) | [`code-runtime-worker-thread`](../packages/code-runtime/code-runtime-worker-thread) | [`tools`](../packages/core/tools) | - | 使用 Host 提供的异步绑定运行一段由模型编写的程序；各后端采用不同的基础环境和语言（工具注册表在 Code Mode 下消费该服务）。 |
+| `ctx.codeRuntime` | `seam` | [`code-runtime`](../packages/code-runtime/code-runtime) | [`code-runtime-worker-thread`](../packages/code-runtime/code-runtime-worker-thread) | [`tools`](../packages/core/tools) | - | 使用 Host 提供的异步绑定运行一段由模型编写的程序；各后端采用不同的基础环境和语言（工具注册表在 PTC mode 下消费该服务）。 |
 | `ctx.fs` | `seam` | [`fs`](../packages/fs/fs) | [`fs-local`](../packages/fs/fs-local), [`fs-sandbox`](../packages/fs/fs-sandbox), [`fs-e2b`](../packages/e2b/fs-e2b) | [`tool-fs`](../packages/fs/tool-fs) | [`fs-observation-policy`](../packages/fs/fs-observation-policy) | tool-fs 通过 ctx.fs 执行读取／写入／编辑；fs-sandbox 按共享沙箱模式限制变更；fs-observation-policy 通过 fs/* 事件门禁贡献基于观测状态的检查。 |
 | `ctx.compaction` | `seam` | [`compaction`](../packages/compaction/compaction) | [`compaction-basic`](../packages/compaction/compaction-basic) | [`compaction-basic`](../packages/compaction/compaction-basic) | - | 基础后端消费步骤后的压力事件和请求错误恢复事件；不存在面向模型的压缩工具。 |
 | `ctx.subagents` | `seam` | [`subagent`](../packages/subagent/subagent) | [`subagent-spawn-in-process`](../packages/subagent/subagent-spawn-in-process), [`subagent-fork-in-process`](../packages/subagent/subagent-fork-in-process), [`subagent-acp`](../packages/subagent/subagent-acp), [`subagent-codex`](../packages/subagent/subagent-codex), [`subagent-claude-code`](../packages/subagent/subagent-claude-code), [`subagent-dsh-sdk`](../packages/subagent/subagent-dsh-sdk) | [`tool-subagent`](../packages/subagent/tool-subagent), [`tool-subagent-control`](../packages/subagent/tool-subagent-control), [`tool-ralph`](../packages/workflow/tool-ralph) | - | 提供方实现传输；该服务还负责可选的、基于 Activation 的延续编排，tool-subagent 选择一次性或可延续委派，tool-subagent-control 传递后续消息，而 tool-ralph 要求一条全新的结构化输出路由。 |