feat: Code Mode — the registry's mode config, the SDK codegen, and the run_code bridge

The dsh-tools half of the Code Mode RFC (its fourth, final change): the
registry gains its first config — mode: native | code | both — and OWNS how
its tools reach the model. 'code' contributes exactly one wire tool,
run_code, plus a lazy tools:sdk prompt section declaring every other tool
as a generated TypeScript API (jsonSchemaToTs: total over the defineTool
subset, unknown degradation, lexicographic byte-identical rendering);
'both' ships both representations; 'native' is byte-for-byte the old
behavior. Non-native modes fail every assembly loudly without a
typescript-language ctx.codeRuntime.

run_code's dispatch bridge: JSON-normalizes each binding argument before
dispatch (what dispatches is what the tool/code-dispatch event logs — the
append can never fail on payload shape; BigInt/circulars reject that one
call), serializes all program tool calls through a per-run queue (even
Promise.all — no concurrency-safety metadata yet), routes every sub-call
through tools/pre-execute → tools/post-execute (a deny rejects the
program-side promise), drops sub-call additionalContext (no safe outlet
mid-run; pinned), owns a run-scoped abort that follows the outer signal in
and fires on settlement (in-flight sub-dispatch aborted, queued abandoned,
queue drained before returning), and converts a failed run into
CodeRunFailedError → a structured isError carrying kind + captured logs.
tool/code-dispatch joins SessionEventMap by declaration merging (log-only;
deriveMessages ignores it).

The composed surface: the tools config forwards through agent-core and
both app packages; examples/code-agent + demo:code run the worker runtime
under mode code (keyless boot smoke + a with-key e2e proving the collapsed
[run_code] header, the dispatch events, and the file the program wrote);
two new snapshot scenarios (code-mode-turn, both-mode-turn) record the SDK
section, collapsed header, dispatch events, and result card — each its own
header-pinning class (the harness gains per-scenario config overlays and
per-class pins). Catalogs, graphs, cookbook, hooks-bridge notes, and the
RFC (moved to implemented/, restructured to decision-era headings) updated
in the same change.

packages/code-runtime/README.md

@@ -1,6 +1,6 @@
 # code-runtime/ — code-execution capability family
 
-The code-execution capability seam (see [capability seams](../../docs/rfc/implemented/architecture/2026-06-13-capability-seams.md)): an abstract runtime interface for executing one model-written program against host-provided async bindings, capturing what it printed and returned. The consumer is the tool registry's Code Mode, specified alongside the seam in the [Code Mode RFC](../../docs/rfc/proposed/feature/2026-06-15-code-mode.md). **Product** packages.
+The code-execution capability seam (see [capability seams](../../docs/rfc/implemented/architecture/2026-06-13-capability-seams.md)): an abstract runtime interface for executing one model-written program against host-provided async bindings, capturing what it printed and returned. The consumer is the tool registry's [Code Mode](../core/tools/README.md) (`tools: { mode: code }` — the `run_code` tool and the generated TypeScript SDK); design in the [Code Mode RFC](../../docs/rfc/implemented/feature/2026-06-15-code-mode.md). **Product** packages.
 
 | Package | Role | ctx key |
 |---|---|---|

packages/code-runtime/code-runtime-worker/README.md

@@ -1,6 +1,6 @@
 # @deepseek-ai/dsh-code-runtime-worker
 
-Worker-thread implementation of the [`@deepseek-ai/dsh-code-runtime`](../code-runtime/README.md) seam: `WorkerCodeRuntime` runs each program in ONE fresh Node `worker_threads.Worker` — TypeScript in, type-stripped host-side, bindings bridged over the message port, `{ value, logs, error? }` out. **Containment, not a security boundary**: trust posture is bash-equivalent by design (the [Code Mode RFC](../../../docs/rfc/proposed/feature/2026-06-15-code-mode.md) § Trust posture), with containment bash does not have — separate isolate, empty environment, heap cap, hard termination.
+Worker-thread implementation of the [`@deepseek-ai/dsh-code-runtime`](../code-runtime/README.md) seam: `WorkerCodeRuntime` runs each program in ONE fresh Node `worker_threads.Worker` — TypeScript in, type-stripped host-side, bindings bridged over the message port, `{ value, logs, error? }` out. **Containment, not a security boundary**: trust posture is bash-equivalent by design (the [Code Mode RFC](../../../docs/rfc/implemented/feature/2026-06-15-code-mode.md) § Trust posture), with containment bash does not have — separate isolate, empty environment, heap cap, hard termination.
 
 ## Config
 

packages/code-runtime/code-runtime/README.md

@@ -2,7 +2,7 @@
 
 The **code-execution seam**: an abstract `CodeRuntime` service (`ctx.codeRuntime`) defining WHAT a code runtime does — run one model-written program against a set of host-provided async bindings and report `{ value, logs, error? }` — without saying HOW.
 
-This package is the interface third of the capability (the bash trio is the template — see [capability seams](../../../docs/rfc/implemented/architecture/2026-06-13-capability-seams.md)): implementations subclass `CodeRuntime` and register the service; the consumer is the tool registry's Code Mode, which generates the model-facing SDK and bridges tool dispatch — both specified in the [Code Mode RFC](../../../docs/rfc/proposed/feature/2026-06-15-code-mode.md), whose first implementation is a Node worker-thread backend. The runtime knows nothing about tools or sessions: it is handed named async functions and a program string, and everything tool-shaped stays with the consumer.
+This package is the interface third of the capability (the bash trio is the template — see [capability seams](../../../docs/rfc/implemented/architecture/2026-06-13-capability-seams.md)): implementations subclass `CodeRuntime` and register the service; the consumer is the tool registry's Code Mode, which generates the model-facing SDK and bridges tool dispatch — both specified in the [Code Mode RFC](../../../docs/rfc/implemented/feature/2026-06-15-code-mode.md), whose first implementation is a Node worker-thread backend. The runtime knows nothing about tools or sessions: it is handed named async functions and a program string, and everything tool-shaped stays with the consumer.
 
 ## Service API (`ctx.codeRuntime`)
 

packages/code-runtime/code-runtime/src/index.ts

@@ -7,7 +7,7 @@
  * substrate (worker thread, separate process, container) and by source
  * language, both declared as readonly descriptors. The design and its
  * consumer (the tool registry's Code Mode) are specified in the Code Mode RFC
- * (docs/rfc/proposed/feature/2026-06-15-code-mode.md).
+ * (docs/rfc/implemented/feature/2026-06-15-code-mode.md).
  *
  * The split mirrors the bash seam (`BashExecutor`): the runtime knows nothing
  * about tools or sessions — it is handed named async functions and a program,