diff --git a/.github/workflows/docs-mkdocs.yml b/.github/workflows/docs-mkdocs.yml
new file mode 100644
index 00000000..bb4b32f5
--- /dev/null
+++ b/.github/workflows/docs-mkdocs.yml
@@ -0,0 +1,50 @@
+name: Deploy Documentation
+
+on:
+ push:
+ branches:
+ - main
+ paths:
+ - 'docs/**'
+ - 'mkdocs.yml'
+ - '.github/workflows/docs-mkdocs.yml'
+ workflow_dispatch:
+
+permissions:
+ contents: read
+
+jobs:
+ deploy:
+ runs-on: ubuntu-latest
+ steps:
+ - name: Checkout
+ uses: actions/checkout@v4
+
+ - name: Set up Python
+ uses: actions/setup-python@v4
+ with:
+ python-version: '3.11'
+ cache: 'pip'
+
+ - name: Install dependencies
+ run: |
+ pip install -r requirements-docs.txt
+
+ - name: Build documentation
+ run: |
+ mkdocs build
+
+ - name: Deploy to Netlify
+ uses: nwtgck/actions-netlify@v3.0
+ with:
+ publish-dir: './site'
+ production-branch: main
+ github-token: ${{ secrets.GITHUB_TOKEN }}
+ deploy-message: "Deploy docs from GitHub Actions"
+ enable-pull-request-comment: false
+ enable-commit-comment: true
+ env:
+ NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
+ NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}
+ timeout-minutes: 1
+
diff --git a/.github/workflows/docs-netlify.yml b/.github/workflows/docs-netlify.yml
new file mode 100644
index 00000000..3aa0498d
--- /dev/null
+++ b/.github/workflows/docs-netlify.yml
@@ -0,0 +1,52 @@
+name: Deploy Documentation to Netlify
+
+on:
+ push:
+ branches:
+ - main
+ paths:
+ - 'docs/**'
+ - '.github/workflows/docs-netlify.yml'
+ workflow_dispatch:
+
+permissions:
+ contents: read
+
+jobs:
+ build-and-deploy:
+ runs-on: ubuntu-latest
+ steps:
+ - name: Checkout
+ uses: actions/checkout@v4
+
+ - name: Setup Ruby
+ uses: ruby/setup-ruby@v1
+ with:
+ ruby-version: '3.1'
+ bundler-cache: true
+
+ - name: Install Jekyll
+ run: |
+ cd docs
+ bundle install
+
+ - name: Build site
+ run: |
+ cd docs
+ bundle exec jekyll build -d ../_site
+
+ - name: Deploy to Netlify
+ uses: nwtgck/actions-netlify@v3.0
+ with:
+ publish-dir: './_site'
+ production-branch: main
+ github-token: ${{ secrets.GITHUB_TOKEN }}
+ deploy-message: "Deploy from GitHub Actions"
+ enable-pull-request-comment: false
+ enable-commit-comment: true
+ overwrites-pull-request-comment: true
+ env:
+ NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
+ NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}
+ timeout-minutes: 1
+
diff --git a/.github/workflows/docs-vercel.yml b/.github/workflows/docs-vercel.yml
new file mode 100644
index 00000000..43fe4804
--- /dev/null
+++ b/.github/workflows/docs-vercel.yml
@@ -0,0 +1,46 @@
+name: Deploy Documentation to Vercel
+
+on:
+ push:
+ branches:
+ - main
+ paths:
+ - 'docs/**'
+ - '.github/workflows/docs-vercel.yml'
+ workflow_dispatch:
+
+permissions:
+ contents: read
+
+jobs:
+ build-and-deploy:
+ runs-on: ubuntu-latest
+ steps:
+ - name: Checkout
+ uses: actions/checkout@v4
+
+ - name: Setup Ruby
+ uses: ruby/setup-ruby@v1
+ with:
+ ruby-version: '3.1'
+ bundler-cache: true
+
+ - name: Install Jekyll
+ run: |
+ cd docs
+ bundle install
+
+ - name: Build site
+ run: |
+ cd docs
+ bundle exec jekyll build -d ../_site
+
+ - name: Deploy to Vercel
+ uses: amondnet/vercel-action@v25
+ with:
+ vercel-token: ${{ secrets.VERCEL_TOKEN }}
+ vercel-org-id: ${{ secrets.VERCEL_ORG_ID }}
+ vercel-project-id: ${{ secrets.VERCEL_PROJECT_ID }}
+ working-directory: ./
+ scope: ${{ secrets.VERCEL_ORG_ID }}
+
diff --git a/docs/TESTING.md b/docs/TESTING.md
new file mode 100644
index 00000000..dbc2a8e7
--- /dev/null
+++ b/docs/TESTING.md
@@ -0,0 +1,53 @@
+# Testing Documentation Locally
+
+## Quick Start
+
+### Install Dependencies
+
+```bash
+pip install -r requirements-docs.txt
+```
+
+### Run Local Server
+
+```bash
+mkdocs serve
+```
+
+Then visit: `http://127.0.0.1:8000`
+
+### Build Static Site
+
+```bash
+mkdocs build
+```
+
+Output will be in the `site/` directory.
+
+## Development Workflow
+
+1. Make changes to `.md` files in `docs/`
+2. Run `mkdocs serve` to preview
+3. Check changes in browser
+4. Commit and push when ready
+
+## Troubleshooting
+
+### Port Already in Use
+
+```bash
+mkdocs serve -a 127.0.0.1:8001
+```
+
+### Clear Cache
+
+```bash
+mkdocs build --clean
+```
+
+### Check Configuration
+
+```bash
+mkdocs build --verbose
+```
+
diff --git a/docs/api.md b/docs/api.md
index 05a7267b..6bdc1ac4 100644
--- a/docs/api.md
+++ b/docs/api.md
@@ -1,5 +1,7 @@
# API Reference
+Complete API documentation for Semantica.
+
## Core Classes
### Semantica
@@ -12,58 +14,282 @@ from semantica import Semantica
semantica = Semantica(config=None)
```
+#### Methods
+
+##### `build_knowledge_base(sources, **kwargs)`
+
+Build a knowledge base from one or more data sources.
+
+**Parameters:**
+- `sources` (List[str] | str): Data source(s) - file paths or URLs
+- `embeddings` (bool): Generate embeddings (default: True)
+- `graph` (bool): Build knowledge graph (default: True)
+- `normalize` (bool): Normalize data (default: True)
+
+**Returns:**
+- `Dict[str, Any]`: Dictionary containing:
+ - `knowledge_graph`: Knowledge graph data
+ - `embeddings`: Embedding vectors
+ - `metadata`: Processing metadata
+ - `statistics`: Processing statistics
+
+**Example:**
+```python
+result = semantica.build_knowledge_base(
+ sources=["document.pdf"],
+ embeddings=True,
+ graph=True
+)
+kg = result["knowledge_graph"]
+```
+
+##### `process_document(source)`
+
+Process a single document.
+
+**Parameters:**
+- `source` (str): File path or URL
+
+**Returns:**
+- `Dict[str, Any]`: Processed document data
+
+##### `extract_entities(text)`
+
+Extract entities from text.
+
+**Parameters:**
+- `text` (str): Input text
+
+**Returns:**
+- `Dict[str, List]`: Dictionary with `entities` list
+
+##### `extract_relationships(text)`
+
+Extract relationships from text.
+
+**Parameters:**
+- `text` (str): Input text
+
+**Returns:**
+- `Dict[str, List]`: Dictionary with `relationships` list
+
+---
+
+## Knowledge Graph Module
+
+### `semantica.kg`
+
+Knowledge graph construction and analysis.
+
+#### Methods
+
+##### `build_graph(sources)`
+
+Build a knowledge graph from sources.
+
+```python
+kg = semantica.kg.build_graph(["document.pdf"])
+```
+
+##### `analyze(graph)`
+
+Analyze a knowledge graph.
+
+```python
+analysis = semantica.kg.analyze(kg)
+print(analysis["statistics"])
+```
+
+##### `visualize(graph, output_path=None)`
+
+Visualize a knowledge graph.
+
+```python
+semantica.kg.visualize(kg, output_path="graph.html")
+```
+
+##### `merge(graphs)`
+
+Merge multiple knowledge graphs.
+
+```python
+merged = semantica.kg.merge([kg1, kg2, kg3])
+```
+
+---
+
+## Semantic Extraction Module
+
+### `semantica.semantic_extract`
+
+Entity and relationship extraction.
+
+#### Methods
+
+##### `extract_entities(text)`
+
+Extract named entities from text.
+
+```python
+result = semantica.semantic_extract.extract_entities(text)
+entities = result["entities"]
+```
+
+##### `extract_relationships(text)`
+
+Extract relationships from text.
+
+```python
+result = semantica.semantic_extract.extract_relationships(text)
+relationships = result["relationships"]
+```
+
+##### `extract_triples(text)`
+
+Extract subject-predicate-object triples.
+
+```python
+result = semantica.semantic_extract.extract_triples(text)
+triples = result["triples"]
+```
+
+---
+
+## Embeddings Module
+
+### `semantica.embeddings`
+
+Embedding generation and management.
+
+#### Methods
+
+##### `generate(text)`
+
+Generate embedding for a single text.
+
+```python
+embedding = semantica.embeddings.generate("Your text here")
+```
+
+##### `generate_batch(texts)`
+
+Generate embeddings for multiple texts.
+
+```python
+texts = ["text1", "text2", "text3"]
+embeddings = semantica.embeddings.generate_batch(texts)
+```
+
+---
+
+## Export Module
+
+### `semantica.export`
+
+Export knowledge graphs to various formats.
+
+#### Methods
+
+##### `to_rdf(kg, path)`
+
+Export to RDF format.
+
+```python
+semantica.export.to_rdf(kg, "output.rdf")
+```
+
+##### `to_json(kg, path)`
+
+Export to JSON format.
+
+```python
+semantica.export.to_json(kg, "output.json")
+```
+
+##### `to_csv(kg, path)`
+
+Export to CSV format.
+
+```python
+semantica.export.to_csv(kg, "output.csv")
+```
+
+##### `to_owl(kg, path)`
+
+Export to OWL ontology format.
+
+```python
+semantica.export.to_owl(kg, "output.owl")
+```
+
+##### `to_yaml(kg, path)`
+
+Export to YAML format.
+
+```python
+semantica.export.to_yaml(kg, "output.yaml")
+```
+
+---
+
+## Conflict Resolution Module
+
+### `semantica.conflicts`
+
+Conflict detection and resolution.
+
+#### Classes
+
+##### `ConflictResolver`
+
+```python
+from semantica.conflicts import ConflictResolver
+
+resolver = ConflictResolver(default_strategy="voting")
+```
+
**Methods:**
-- `build_knowledge_base(sources, **kwargs)` - Build knowledge base from sources
-- `process_document(source)` - Process a single document
-- `extract_entities(text)` - Extract entities from text
-- `extract_relationships(text)` - Extract relationships from text
-
-## Modules
-
-### Knowledge Graph (`semantica.kg`)
+- `resolve_conflicts(conflicts)`: Resolve multiple conflicts
+- `resolve_conflict(conflict, strategy=None)`: Resolve a single conflict
+- `set_resolution_rule(property, strategy)`: Set custom resolution rules
+**Example:**
```python
-semantica.kg.build_graph(sources)
-semantica.kg.analyze(graph)
-semantica.kg.visualize(graph)
+resolver = ConflictResolver(default_strategy="voting")
+resolved = resolver.resolve_conflicts(conflicts)
```
-### Semantic Extraction (`semantica.semantic_extract`)
-
-```python
-semantica.semantic_extract.extract_entities(text)
-semantica.semantic_extract.extract_relationships(text)
-semantica.semantic_extract.extract_triples(text)
-```
-
-### Embeddings (`semantica.embeddings`)
-
-```python
-semantica.embeddings.generate(text)
-semantica.embeddings.generate_batch(texts)
-```
-
-### Export (`semantica.export`)
-
-```python
-semantica.export.to_rdf(kg, path)
-semantica.export.to_json(kg, path)
-semantica.export.to_csv(kg, path)
-```
+---
## Configuration
+### `Config`
+
+Configuration class for Semantica.
+
```python
from semantica import Config
config = Config(
embeddings=True,
graph=True,
- normalize=True
+ normalize=True,
+ conflict_resolution="voting"
)
semantica = Semantica(config=config)
```
-For full API documentation, see [MODULES_DOCUMENTATION.md](../MODULES_DOCUMENTATION.md)
+**Parameters:**
+- `embeddings` (bool): Enable embedding generation
+- `graph` (bool): Enable knowledge graph construction
+- `normalize` (bool): Enable data normalization
+- `conflict_resolution` (str): Default conflict resolution strategy
+---
+
+## Full Documentation
+
+For complete module documentation, see:
+- [MODULES_DOCUMENTATION.md](../MODULES_DOCUMENTATION.md) - Detailed module documentation
+- [GitHub Repository](https://github.com/Hawksight-AI/semantica) - Source code
diff --git a/docs/citation.md b/docs/citation.md
new file mode 100644
index 00000000..16210554
--- /dev/null
+++ b/docs/citation.md
@@ -0,0 +1,68 @@
+# Citation
+
+How to cite Semantica in academic papers and research.
+
+## BibTeX
+
+```bibtex
+@software{semantica2024,
+ title = {Semantica: An Open Source Framework for Semantic Layers and Knowledge Engineering},
+ author = {Hawksight AI},
+ year = {2024},
+ url = {https://github.com/Hawksight-AI/semantica},
+ version = {0.0.1},
+ license = {MIT}
+}
+```
+
+## APA Format
+
+Hawksight AI. (2024). *Semantica: An Open Source Framework for Semantic Layers and Knowledge Engineering* (Version 0.0.1) [Computer software]. GitHub. https://github.com/Hawksight-AI/semantica
+
+## MLA Format
+
+Hawksight AI. *Semantica: An Open Source Framework for Semantic Layers and Knowledge Engineering*. Version 0.0.1, GitHub, 2024, https://github.com/Hawksight-AI/semantica.
+
+## Chicago Style
+
+Hawksight AI. *Semantica: An Open Source Framework for Semantic Layers and Knowledge Engineering*. Version 0.0.1. GitHub, 2024. https://github.com/Hawksight-AI/semantica.
+
+## IEEE Format
+
+Hawksight AI, "Semantica: An Open Source Framework for Semantic Layers and Knowledge Engineering," Version 0.0.1, GitHub, 2024. [Online]. Available: https://github.com/Hawksight-AI/semantica
+
+## Plain Text Citation
+
+If you use Semantica in your research, please cite:
+
+```
+Semantica: An Open Source Framework for Semantic Layers and Knowledge Engineering
+Hawksight AI (2024)
+https://github.com/Hawksight-AI/semantica
+Version 0.0.1
+```
+
+## Research Papers
+
+If you publish research using Semantica, we'd love to know! Please:
+
+1. Share your paper with us
+2. Let us know how Semantica was used
+3. We may feature your work in our documentation
+
+Contact: [GitHub Discussions](https://github.com/Hawksight-AI/semantica/discussions)
+
+## Acknowledgments
+
+If you use Semantica in your work, we appreciate acknowledgments such as:
+
+> "This work uses Semantica (Hawksight AI, 2024), an open-source framework for semantic layer construction and knowledge engineering."
+
+## License
+
+Semantica is licensed under the MIT License. See the [License](license.md) page for details.
+
+---
+
+**Questions about citation?** [Open a discussion](https://github.com/Hawksight-AI/semantica/discussions) or [contact us](https://github.com/Hawksight-AI/semantica/issues).
+
diff --git a/docs/community-projects.md b/docs/community-projects.md
new file mode 100644
index 00000000..5ec80fa7
--- /dev/null
+++ b/docs/community-projects.md
@@ -0,0 +1,138 @@
+# Community Projects
+
+Projects, integrations, and contributions from the Semantica community.
+
+## Projects Using Semantica
+
+### Research Projects
+
+- **Academic Research**: Knowledge graph construction for research papers
+- **Biomedical Analysis**: Drug discovery and genomic analysis
+- **Social Network Analysis**: Relationship mapping and analysis
+
+### Industry Applications
+
+- **Business Intelligence**: Company knowledge bases
+- **Cybersecurity**: Threat intelligence and analysis
+- **Healthcare**: Medical record processing
+- **Finance**: Market analysis and fraud detection
+
+## Community Contributions
+
+### Integrations
+
+#### Vector Database Integrations
+
+- **Pinecone Integration**: [Example](https://github.com/Hawksight-AI/semantica/tree/main/examples/pinecone)
+- **Weaviate Integration**: [Example](https://github.com/Hawksight-AI/semantica/tree/main/examples/weaviate)
+- **Qdrant Integration**: [Example](https://github.com/Hawksight-AI/semantica/tree/main/examples/qdrant)
+
+#### Knowledge Graph Databases
+
+- **Neo4j Integration**: Export and query with Neo4j
+- **Amazon Neptune**: Cloud-based graph database integration
+- **ArangoDB**: Multi-model database support
+
+### Plugins and Extensions
+
+Community-created plugins:
+
+- Custom entity extractors
+- Domain-specific exporters
+- Integration adapters
+- Visualization tools
+
+## Showcase Your Project
+
+Have a project using Semantica? We'd love to feature it!
+
+### How to Submit
+
+1. Create a pull request or issue
+2. Include:
+ - Project description
+ - Use case
+ - Code examples (if possible)
+ - Screenshots or demos
+ - Link to your project
+
+### Submission Template
+
+```markdown
+## Project Name
+
+**Description**: Brief description of your project
+
+**Use Case**: How you're using Semantica
+
+**Key Features**:
+- Feature 1
+- Feature 2
+
+**Links**:
+- GitHub: [link]
+- Demo: [link]
+- Documentation: [link]
+```
+
+## Community Tutorials
+
+### User-Created Tutorials
+
+- [Tutorial 1](link) - Description
+- [Tutorial 2](link) - Description
+- [Tutorial 3](link) - Description
+
+### Video Tutorials
+
+- [Video 1](link) - Description
+- [Video 2](link) - Description
+
+## Contributing
+
+Want to contribute? Here's how:
+
+### Code Contributions
+
+1. Fork the repository
+2. Create a feature branch
+3. Make your changes
+4. Submit a pull request
+
+See our [Contributing Guide](https://github.com/Hawksight-AI/semantica/blob/main/CONTRIBUTING.md) for details.
+
+### Documentation Contributions
+
+- Fix typos
+- Improve examples
+- Add tutorials
+- Translate documentation
+
+### Community Support
+
+- Answer questions in discussions
+- Help with issues
+- Share your experiences
+- Provide feedback
+
+## Recognition
+
+### Contributors
+
+Thank you to all contributors! See our [Contributors](https://github.com/Hawksight-AI/semantica/graphs/contributors) page.
+
+### Top Contributors
+
+- [Contributor 1](link) - Contributions
+- [Contributor 2](link) - Contributions
+
+## Resources
+
+- **[GitHub Discussions](https://github.com/Hawksight-AI/semantica/discussions)** - Community discussions
+- **[GitHub Issues](https://github.com/Hawksight-AI/semantica/issues)** - Bug reports and feature requests
+- **[Examples Repository](https://github.com/Hawksight-AI/semantica/tree/main/examples)** - More examples
+
+---
+
+**Want to be featured?** [Submit your project](https://github.com/Hawksight-AI/semantica/discussions/categories/show-and-tell)!
+
diff --git a/docs/concepts.md b/docs/concepts.md
new file mode 100644
index 00000000..22031951
--- /dev/null
+++ b/docs/concepts.md
@@ -0,0 +1,161 @@
+# Core Concepts
+
+Understand the fundamental concepts behind Semantica.
+
+## What is a Knowledge Graph?
+
+A knowledge graph is a structured representation of information where:
+
+- **Entities** are the nodes (people, places, concepts, etc.)
+- **Relationships** are the edges connecting entities
+- **Properties** describe attributes of entities
+
+```mermaid
+graph LR
+ A[Apple Inc.
Organization] -->|founded_by| B[Steve Jobs
Person]
+ A -->|located_in| C[Cupertino
Location]
+ C -->|in_state| D[California
Location]
+
+ style A fill:#e3f2fd
+ style B fill:#fff3e0
+ style C fill:#f3e5f5
+ style D fill:#f3e5f5
+```
+
+## Semantic Layer
+
+A semantic layer provides:
+
+- **Structured meaning** from unstructured data
+- **Contextual relationships** between concepts
+- **Queryable knowledge** for AI systems
+- **Quality-assured data** with conflict resolution
+
+## Key Components
+
+### 1. Data Ingestion
+
+Import data from various sources:
+
+- Documents (PDF, DOCX, HTML)
+- Databases
+- APIs and web content
+- Structured data (JSON, CSV)
+
+### 2. Entity Extraction
+
+Identify and extract:
+
+- **Named Entities**: People, organizations, locations
+- **Concepts**: Ideas, topics, themes
+- **Events**: Actions, occurrences
+- **Relations**: Connections between entities
+
+### 3. Relationship Extraction
+
+Discover relationships:
+
+- **Explicit**: Directly stated in text
+- **Implicit**: Inferred from context
+- **Temporal**: Time-based relationships
+- **Causal**: Cause-and-effect connections
+
+### 4. Knowledge Graph Construction
+
+Build structured graphs:
+
+- **Node creation**: Entities as nodes
+- **Edge creation**: Relationships as edges
+- **Property assignment**: Attributes and metadata
+- **Graph validation**: Quality checks
+
+### 5. Conflict Resolution
+
+Handle conflicting information:
+
+- **Multiple sources**: Same entity, different facts
+- **Resolution strategies**: Voting, credibility, recency
+- **Quality assurance**: Validation and verification
+
+### 6. Embedding Generation
+
+Create vector representations:
+
+- **Text embeddings**: Semantic text vectors
+- **Graph embeddings**: Node and edge vectors
+- **Multimodal**: Text, image, audio embeddings
+
+## Workflow
+
+Typical Semantica workflow:
+
+```mermaid
+flowchart TD
+ A[Data Source] --> B[Ingestion]
+ B --> C[Parsing]
+ C --> D[Extraction
Entities & Relationships]
+ D --> E[Normalization]
+ E --> F[Conflict Resolution]
+ F --> G[Knowledge Graph]
+ G --> H[Embeddings]
+ H --> I[Export]
+
+ style A fill:#e3f2fd
+ style G fill:#c8e6c9
+ style I fill:#fff9c4
+```
+
+## Use Cases
+
+### GraphRAG
+
+Enhance RAG systems with knowledge graphs:
+
+- **Context expansion**: Follow relationships
+- **Multi-hop reasoning**: Traverse graph paths
+- **Structured queries**: Query graph directly
+
+### AI Agents
+
+Provide agents with:
+
+- **Persistent memory**: Knowledge graph as memory
+- **Context understanding**: Semantic relationships
+- **Action validation**: Check against knowledge
+
+### Data Integration
+
+Unify data from multiple sources:
+
+- **Schema mapping**: Automatic schema discovery
+- **Entity resolution**: Match entities across sources
+- **Conflict resolution**: Handle contradictions
+
+## Best Practices
+
+### 1. Start Small
+
+Begin with a single document or small dataset to understand the workflow.
+
+### 2. Iterate
+
+Build knowledge graphs incrementally, refining as you learn.
+
+### 3. Validate
+
+Always validate extracted entities and relationships.
+
+### 4. Resolve Conflicts
+
+Use appropriate conflict resolution strategies for your use case.
+
+### 5. Export Regularly
+
+Export your knowledge graphs for backup and analysis.
+
+## Next Steps
+
+- **[Quick Start](quickstart.md)** - Build your first knowledge graph
+- **[Examples](examples.md)** - See real-world applications
+- **[API Reference](api.md)** - Explore the full API
+
diff --git a/docs/cookbook.md b/docs/cookbook.md
new file mode 100644
index 00000000..1ea6754a
--- /dev/null
+++ b/docs/cookbook.md
@@ -0,0 +1,182 @@
+# Cookbook Recipes
+
+Interactive Jupyter notebooks with hands-on examples and tutorials.
+
+## Introduction
+
+Get started with Semantica through these beginner-friendly tutorials.
+
+### Getting Started
+
+- **[Welcome to Semantica](cookbook/introduction/Welcome_to_Semantica.ipynb)** - Introduction to the framework
+- **[Your First Knowledge Graph](cookbook/introduction/Your_First_Knowledge_Graph.ipynb)** - Build your first KG
+- **[Configuration Basics](cookbook/introduction/Configuration_Basics.ipynb)** - Learn configuration options
+
+### Core Concepts
+
+- **[Data Ingestion](cookbook/introduction/Data_Ingestion.ipynb)** - Ingest data from various sources
+- **[Document Parsing](cookbook/introduction/Document_Parsing.ipynb)** - Parse different document formats
+- **[Data Normalization](cookbook/introduction/Data_Normalization.ipynb)** - Normalize and clean data
+- **[Entity Extraction](cookbook/introduction/Entity_Extraction.ipynb)** - Extract entities from text
+- **[Relation Extraction](cookbook/introduction/Relation_Extraction.ipynb)** - Extract relationships
+- **[Building Knowledge Graphs](cookbook/introduction/Building_Knowledge_Graphs.ipynb)** - Construct KGs
+
+### Quality and Analysis
+
+- **[Conflict Detection](cookbook/introduction/Conflict_Detection.ipynb)** - Detect data conflicts
+- **[Deduplication](cookbook/introduction/Deduplication.ipynb)** - Remove duplicates
+- **[Graph Quality](cookbook/introduction/Graph_Quality.ipynb)** - Assess KG quality
+- **[Graph Analytics](cookbook/introduction/Graph_Analytics.ipynb)** - Analyze knowledge graphs
+
+### Advanced Features
+
+- **[Embedding Generation](cookbook/introduction/Embedding_Generation.ipynb)** - Generate embeddings
+- **[Vector Store](cookbook/introduction/Vector_Store.ipynb)** - Store and query vectors
+- **[Ontology](cookbook/introduction/Ontology.ipynb)** - Work with ontologies
+- **[Visualization](cookbook/introduction/Visualization.ipynb)** - Visualize knowledge graphs
+- **[Export](cookbook/introduction/Export.ipynb)** - Export in various formats
+
+## Advanced
+
+Advanced techniques and patterns for experienced users.
+
+### Advanced Extraction
+
+- **[Advanced Extraction](cookbook/advanced/Advanced_Extraction.ipynb)** - Advanced extraction techniques
+- **[Text Chunking Strategies](cookbook/advanced/Text_Chunking_Strategies.ipynb)** - Optimize text chunking
+
+### Graph Operations
+
+- **[Advanced Graph Analytics](cookbook/advanced/Advanced_Graph_Analytics.ipynb)** - Advanced graph analysis
+- **[Temporal Knowledge Graphs](cookbook/advanced/Temporal_Knowledge_Graphs.ipynb)** - Work with temporal data
+- **[Semantic Layer Construction](cookbook/advanced/Semantic_Layer_Construction.ipynb)** - Build semantic layers
+
+### Integration and Processing
+
+- **[Multi-Source Data Integration](cookbook/advanced/Multi_Source_Data_Integration.ipynb)** - Integrate multiple sources
+- **[Pipeline Orchestration](cookbook/advanced/Pipeline_Orchestration.ipynb)** - Orchestrate complex pipelines
+- **[Unstructured to Ontology](cookbook/advanced/Unstructured_to_Ontology.ipynb)** - Convert unstructured to ontology
+
+### Quality and Resolution
+
+- **[Conflict Resolution Strategies](cookbook/advanced/Conflict_Resolution_Strategies.ipynb)** - Advanced conflict resolution
+- **[Reasoning and Inference](cookbook/advanced/Reasoning_and_Inference.ipynb)** - Perform reasoning
+
+### Visualization and Export
+
+- **[Complete Visualization Suite](cookbook/advanced/Complete_Visualization_Suite.ipynb)** - Comprehensive visualization
+- **[Multi-Format Export](cookbook/advanced/Multi_Format_Export.ipynb)** - Export to multiple formats
+
+## Use Cases
+
+Real-world applications across various domains.
+
+### Advanced RAG
+
+- **[GraphRAG Complete](cookbook/use_cases/advanced_rag/GraphRAG_Complete.ipynb)** - Complete GraphRAG implementation
+
+### Biomedical
+
+- **[Drug Discovery Pipeline](cookbook/use_cases/biomedical/Drug_Discovery_Pipeline.ipynb)** - Drug discovery workflows
+- **[Genomic Variant Analysis](cookbook/use_cases/biomedical/Genomic_Variant_Analysis.ipynb)** - Genomic data analysis
+
+### Blockchain
+
+- **[DeFi Protocol Intelligence](cookbook/use_cases/blockchain/DeFi_Protocol_Intelligence.ipynb)** - DeFi analysis
+- **[Transaction Network Analysis](cookbook/use_cases/blockchain/Transaction_Network_Analysis.ipynb)** - Blockchain network analysis
+
+### Cybersecurity
+
+- **[Threat Intelligence Integration](cookbook/use_cases/cybersecurity/Threat_Intelligence_Integration.ipynb)** - Threat intelligence
+- **[Threat Intelligence Hybrid RAG](cookbook/use_cases/cybersecurity/Threat_Intelligence_Hybrid_RAG.ipynb)** - Hybrid RAG for threats
+- **[Threat Correlation](cookbook/use_cases/cybersecurity/Threat_Correlation.ipynb)** - Correlate threats
+- **[Anomaly Detection Real-Time](cookbook/use_cases/cybersecurity/Anomaly_Detection_Real_Time.ipynb)** - Real-time anomaly detection
+- **[Incident Analysis](cookbook/use_cases/cybersecurity/Incident_Analysis.ipynb)** - Analyze security incidents
+- **[Vulnerability Tracking](cookbook/use_cases/cybersecurity/Vulnerability_Tracking.ipynb)** - Track vulnerabilities
+
+### Finance
+
+- **[Financial Data Integration](cookbook/use_cases/finance/Financial_Data_Integration.ipynb)** - Integrate financial data
+- **[Financial Reports Analysis](cookbook/use_cases/finance/Financial_Reports_Analysis.ipynb)** - Analyze reports
+- **[Fraud Detection](cookbook/use_cases/finance/Fraud_Detection.ipynb)** - Detect fraud
+- **[Investment Analysis Hybrid RAG](cookbook/use_cases/finance/Investment_Analysis_Hybrid_RAG.ipynb)** - Investment analysis
+- **[Market Intelligence](cookbook/use_cases/finance/Market_Intelligence.ipynb)** - Market analysis
+- **[Regulatory Compliance](cookbook/use_cases/finance/Regulatory_Compliance.ipynb)** - Compliance workflows
+
+### Healthcare
+
+- **[Clinical Reports Processing](cookbook/use_cases/healthcare/Clinical_Reports_Processing.ipynb)** - Process clinical data
+- **[Disease Network Analysis](cookbook/use_cases/healthcare/Disease_Network_Analysis.ipynb)** - Analyze disease networks
+- **[Drug Interactions Analysis](cookbook/use_cases/healthcare/Drug_Interactions_Analysis.ipynb)** - Drug interaction analysis
+- **[Healthcare GraphRAG Hybrid](cookbook/use_cases/healthcare/Healthcare_GraphRAG_Hybrid.ipynb)** - Healthcare GraphRAG
+- **[Medical Database Integration](cookbook/use_cases/healthcare/Medical_Database_Integration.ipynb)** - Integrate medical databases
+- **[Medical Literature GraphRAG](cookbook/use_cases/healthcare/Medical_Literature_GraphRAG.ipynb)** - Literature analysis
+- **[Patient Records Temporal](cookbook/use_cases/healthcare/Patient_Records_Temporal.ipynb)** - Temporal patient data
+
+### Intelligence
+
+- **[Network Analysis Intelligence Reports](cookbook/use_cases/intelligence/Network_Analysis_Intelligence_Reports.ipynb)** - Intelligence network analysis
+
+### Renewable Energy
+
+- **[Energy Market Analysis](cookbook/use_cases/renewable_energy/Energy_Market_Analysis.ipynb)** - Energy market insights
+- **[Environmental Impact](cookbook/use_cases/renewable_energy/Environmental_Impact.ipynb)** - Environmental analysis
+- **[Grid Management](cookbook/use_cases/renewable_energy/Grid_Management.ipynb)** - Grid optimization
+- **[Resource Optimization](cookbook/use_cases/renewable_energy/Resource_Optimization.ipynb)** - Optimize resources
+- **[Supply Chain Analysis](cookbook/use_cases/renewable_energy/Supply_Chain_Analysis.ipynb)** - Energy supply chains
+
+### Supply Chain
+
+- **[Supply Chain Data Integration](cookbook/use_cases/supply_chain/Supply_Chain_Data_Integration.ipynb)** - Integrate supply chain data
+- **[Supply Chain Risk Management](cookbook/use_cases/supply_chain/Supply_Chain_Risk_Management.ipynb)** - Risk management
+
+### Trading
+
+- **[Market Data Analysis](cookbook/use_cases/trading/Market_Data_Analysis.ipynb)** - Analyze market data
+- **[News Sentiment Analysis](cookbook/use_cases/trading/News_Sentiment_Analysis.ipynb)** - Sentiment analysis
+- **[Real-Time Market Data](cookbook/use_cases/trading/Real_Time_Market_Data.ipynb)** - Real-time processing
+- **[Real-Time Monitoring](cookbook/use_cases/trading/Real_Time_Monitoring.ipynb)** - Monitor markets
+- **[Risk Assessment](cookbook/use_cases/trading/Risk_Assessment.ipynb)** - Assess risks
+- **[Strategy Backtesting](cookbook/use_cases/trading/Strategy_Backtesting.ipynb)** - Backtest strategies
+
+## Running the Notebooks
+
+### Prerequisites
+
+```bash
+# Install Semantica
+pip install semantica
+
+# Install Jupyter
+pip install jupyter notebook
+
+# Optional: Install JupyterLab
+pip install jupyterlab
+```
+
+### Launch Jupyter
+
+```bash
+# Start Jupyter Notebook
+jupyter notebook
+
+# Or start JupyterLab
+jupyter lab
+```
+
+Navigate to the `cookbook/` directory and open any notebook.
+
+### Viewing on GitHub
+
+All notebooks can be viewed directly on GitHub. Click any notebook link above to view it online.
+
+## Contributing
+
+Have a use case or example to share? We welcome contributions!
+
+1. Create a new notebook in the appropriate category
+2. Follow the existing notebook structure
+3. Submit a pull request
+
+See our [Contributing Guide](https://github.com/Hawksight-AI/semantica/blob/main/CONTRIBUTING.md) for details.
+
diff --git a/docs/css/custom.css b/docs/css/custom.css
new file mode 100644
index 00000000..cebfe4b1
--- /dev/null
+++ b/docs/css/custom.css
@@ -0,0 +1,118 @@
+/* Custom CSS for Semantica Documentation */
+
+/* Smooth scrolling */
+html {
+ scroll-behavior: smooth;
+}
+
+/* Enhanced code blocks */
+.md-typeset pre > code {
+ border-radius: 8px;
+ padding: 1.2em;
+}
+
+/* Custom card styles */
+.feature-card {
+ transition: transform 0.2s ease, box-shadow 0.2s ease;
+}
+
+.feature-card:hover {
+ transform: translateY(-2px);
+ box-shadow: 0 4px 12px rgba(0, 0, 0, 0.15);
+}
+
+/* Diagram containers */
+.mermaid {
+ background: var(--md-default-bg-color);
+ border-radius: 8px;
+ padding: 1em;
+ margin: 1em 0;
+}
+
+/* Enhanced tables */
+.md-typeset table:not([class]) {
+ border-radius: 8px;
+ overflow: hidden;
+}
+
+/* Custom animations */
+@keyframes fadeIn {
+ from {
+ opacity: 0;
+ transform: translateY(10px);
+ }
+ to {
+ opacity: 1;
+ transform: translateY(0);
+ }
+}
+
+.animate-fade-in {
+ animation: fadeIn 0.5s ease-out;
+}
+
+/* Better spacing for sections */
+.md-typeset h2 {
+ margin-top: 2em;
+ margin-bottom: 1em;
+}
+
+.md-typeset h3 {
+ margin-top: 1.5em;
+ margin-bottom: 0.75em;
+}
+
+/* Enhanced badges */
+.badge {
+ display: inline-block;
+ padding: 0.25em 0.75em;
+ border-radius: 4px;
+ font-size: 0.85em;
+ font-weight: 500;
+}
+
+/* Custom button styles */
+.md-button {
+ border-radius: 6px;
+ transition: all 0.2s ease;
+}
+
+.md-button:hover {
+ transform: translateY(-1px);
+ box-shadow: 0 2px 8px rgba(0, 0, 0, 0.15);
+}
+
+/* Improved code copy button */
+.md-clipboard {
+ opacity: 0.7;
+ transition: opacity 0.2s ease;
+}
+
+.md-clipboard:hover {
+ opacity: 1;
+}
+
+/* Chart and diagram containers */
+.chart-container {
+ background: var(--md-code-bg-color);
+ border-radius: 8px;
+ padding: 1.5em;
+ margin: 1.5em 0;
+ border: 1px solid var(--md-code-hl-color);
+}
+
+/* Responsive improvements */
+@media screen and (max-width: 76.1875em) {
+ .md-nav--primary .md-nav__title {
+ font-size: 1.1rem;
+ }
+}
+
+/* Print styles */
+@media print {
+ .md-sidebar,
+ .md-header {
+ display: none;
+ }
+}
+
diff --git a/docs/deep-dive.md b/docs/deep-dive.md
new file mode 100644
index 00000000..41bc256d
--- /dev/null
+++ b/docs/deep-dive.md
@@ -0,0 +1,283 @@
+# Deep Dive
+
+Advanced topics, architecture, and internals of Semantica.
+
+## Architecture Overview
+
+Semantica follows a modular, extensible architecture:
+
+```mermaid
+graph TB
+ A[Data Sources] --> B[Ingestion Layer]
+ B --> C[Parsing Layer]
+ C --> D[Extraction Layer]
+ D --> E[Normalization Layer]
+ E --> F[Conflict Resolution]
+ F --> G[Knowledge Graph Builder]
+ G --> H[Embedding Generator]
+ H --> I[Export Layer]
+
+ D --> D1[Entity Extractor]
+ D --> D2[Relationship Extractor]
+ D --> D3[Triple Extractor]
+
+ G --> G1[Graph Validator]
+ G --> G2[Graph Analyzer]
+
+ H --> H1[Text Embeddings]
+ H --> H2[Graph Embeddings]
+```
+
+## System Components
+
+### 1. Ingestion Layer
+
+Handles data input from various sources:
+
+- **File Ingestor**: PDF, DOCX, HTML, JSON, CSV
+- **Web Ingestor**: URLs, web scraping
+- **Database Ingestor**: SQL databases
+- **Stream Ingestor**: Real-time data streams
+
+### 2. Parsing Layer
+
+Converts raw data into structured format:
+
+- Document parsing (PDF, Word, etc.)
+- Text extraction
+- Metadata extraction
+- Format normalization
+
+### 3. Extraction Layer
+
+Core semantic extraction:
+
+```python
+# Entity extraction pipeline
+text → Tokenization → NER → Entity Linking → Entity Validation
+```
+
+**Components:**
+- Named Entity Recognition (NER)
+- Relationship Extraction
+- Triple Extraction
+- Coreference Resolution
+
+### 4. Normalization Layer
+
+Standardizes extracted data:
+
+- Entity normalization
+- Date/time normalization
+- Number normalization
+- Text cleaning
+
+### 5. Conflict Resolution
+
+Handles conflicting information:
+
+```mermaid
+graph LR
+ A[Multiple Sources] --> B[Conflict Detection]
+ B --> C{Resolution Strategy}
+ C --> D[Voting]
+ C --> E[Credibility Weighted]
+ C --> F[Most Recent]
+ C --> G[Highest Confidence]
+ D --> H[Resolved Entity]
+ E --> H
+ F --> H
+ G --> H
+
+ style A fill:#ffebee
+ style H fill:#c8e6c9
+ style C fill:#fff9c4
+```
+
+### 6. Knowledge Graph Builder
+
+Constructs the knowledge graph:
+
+- Node creation (entities)
+- Edge creation (relationships)
+- Property assignment
+- Graph validation
+- Quality checks
+
+### 7. Embedding Generator
+
+Generates vector representations:
+
+- Text embeddings (sentence transformers)
+- Graph embeddings (node2vec, GraphSAGE)
+- Multimodal embeddings
+
+## Data Flow
+
+```mermaid
+sequenceDiagram
+ participant User
+ participant Semantica
+ participant Ingestor
+ participant Parser
+ participant Extractor
+ participant Resolver
+ participant GraphBuilder
+ participant Exporter
+
+ User->>Semantica: build_knowledge_base(sources)
+ Semantica->>Ingestor: ingest(sources)
+ Ingestor->>Parser: parse(documents)
+ Parser->>Extractor: extract(text)
+ Extractor->>Resolver: resolve_conflicts(entities)
+ Resolver->>GraphBuilder: build_graph(resolved_data)
+ GraphBuilder->>Exporter: export(graph)
+ Exporter->>User: return result
+
+ Note over User,Exporter: Complete pipeline execution
+```
+
+## Advanced Concepts
+
+### Entity Resolution
+
+Matching entities across sources:
+
+```python
+# Entity resolution algorithm
+def resolve_entities(entities):
+ clusters = []
+ for entity in entities:
+ matched = False
+ for cluster in clusters:
+ if similarity(entity, cluster.representative) > threshold:
+ cluster.add(entity)
+ matched = True
+ break
+ if not matched:
+ clusters.append(EntityCluster(entity))
+ return clusters
+```
+
+### Relationship Inference
+
+Inferring implicit relationships:
+
+- Transitive relationships
+- Temporal relationships
+- Causal relationships
+- Hierarchical relationships
+
+### Graph Optimization
+
+Optimizing knowledge graph structure:
+
+- Node deduplication
+- Edge consolidation
+- Path compression
+- Index optimization
+
+## Performance Considerations
+
+### Scalability
+
+- **Horizontal Scaling**: Process multiple documents in parallel
+- **Vertical Scaling**: Use GPU acceleration
+- **Caching**: Cache embeddings and parsed documents
+- **Lazy Loading**: Load components on demand
+
+### Memory Management
+
+```python
+# Process large datasets efficiently
+def process_large_dataset(sources, batch_size=100):
+ for i in range(0, len(sources), batch_size):
+ batch = sources[i:i+batch_size]
+ result = semantica.build_knowledge_base(batch)
+ # Save and clear memory
+ save_result(result)
+ del result
+ gc.collect()
+```
+
+## Extension Points
+
+### Custom Plugins
+
+Create custom plugins:
+
+```python
+from semantica.core import Plugin
+
+class CustomPlugin(Plugin):
+ def process(self, data):
+ # Your custom processing
+ return processed_data
+```
+
+### Custom Extractors
+
+Implement custom extractors:
+
+```python
+from semantica.semantic_extract import BaseExtractor
+
+class DomainSpecificExtractor(BaseExtractor):
+ def extract_entities(self, text):
+ # Domain-specific extraction logic
+ return entities
+```
+
+## Internal APIs
+
+### Core APIs
+
+- `Semantica.build_knowledge_base()` - Main entry point
+- `KGBuilder.build()` - Graph construction
+- `ConflictResolver.resolve()` - Conflict resolution
+- `EmbeddingGenerator.generate()` - Embedding generation
+
+### Extension APIs
+
+- Plugin registration
+- Custom extractor registration
+- Custom exporter registration
+- Event hooks
+
+## Design Decisions
+
+### Why Modular Architecture?
+
+- **Extensibility**: Easy to add new features
+- **Testability**: Components can be tested independently
+- **Maintainability**: Clear separation of concerns
+- **Flexibility**: Swap implementations easily
+
+### Why Conflict Resolution?
+
+- **Data Quality**: Ensures consistent knowledge
+- **Multi-Source**: Handles conflicting information
+- **Flexibility**: Multiple resolution strategies
+- **Transparency**: Track resolution decisions
+
+## Future Enhancements
+
+Planned improvements:
+
+- Distributed processing
+- Real-time streaming
+- Advanced reasoning
+- Multi-modal support expansion
+- Enhanced visualization
+
+## Contributing to Core
+
+Interested in contributing to Semantica's core? See our [Contributing Guide](https://github.com/Hawksight-AI/semantica/blob/main/CONTRIBUTING.md).
+
+---
+
+For more information:
+- **[API Reference](api.md)** - Detailed API documentation
+- **[Learning More](learning-more.md)** - Additional resources
+- **[GitHub Repository](https://github.com/Hawksight-AI/semantica)** - Source code
+
diff --git a/docs/examples.md b/docs/examples.md
index 44cc5003..4f2f5ea4 100644
--- a/docs/examples.md
+++ b/docs/examples.md
@@ -1,6 +1,12 @@
# Examples
-## Example 1: Basic Knowledge Graph
+Real-world examples and use cases for Semantica.
+
+## Basic Examples
+
+### Example 1: Basic Knowledge Graph
+
+Build a knowledge graph from a single document:
```python
from semantica import Semantica
@@ -19,7 +25,9 @@ print(f"Entities: {len(kg['entities'])}")
print(f"Relationships: {len(kg['relationships'])}")
```
-## Example 2: Entity Extraction
+### Example 2: Entity Extraction
+
+Extract entities from text:
```python
from semantica import Semantica
@@ -29,14 +37,26 @@ semantica = Semantica()
text = """
Apple Inc. is a technology company founded by Steve Jobs.
The company is headquartered in Cupertino, California.
+Tim Cook is the current CEO of Apple.
"""
entities = semantica.semantic_extract.extract_entities(text)
-for entity in entities:
+for entity in entities["entities"]:
print(f"{entity['text']}: {entity['type']}")
```
-## Example 3: Multi-Source Integration
+**Output:**
+```
+Apple Inc.: ORGANIZATION
+Steve Jobs: PERSON
+Cupertino: LOCATION
+California: LOCATION
+Tim Cook: PERSON
+```
+
+### Example 3: Multi-Source Integration
+
+Combine data from multiple sources:
```python
from semantica import Semantica
@@ -50,9 +70,14 @@ sources = [
]
result = semantica.build_knowledge_base(sources)
+kg = result["knowledge_graph"]
+
+print(f"Unified knowledge graph with {len(kg['entities'])} entities")
```
-## Example 4: Export Formats
+### Example 4: Export Formats
+
+Export knowledge graph to multiple formats:
```python
from semantica import Semantica
@@ -60,14 +85,188 @@ from semantica import Semantica
semantica = Semantica()
kg = semantica.kg.build_graph(["data.pdf"])
-# Export to multiple formats
+# Export to different formats
semantica.export.to_rdf(kg, "output.rdf")
semantica.export.to_json(kg, "output.json")
+semantica.export.to_csv(kg, "output.csv")
semantica.export.to_owl(kg, "output.owl")
```
-## More Examples
+## Advanced Examples
-- [Code Examples](../CodeExamples.md)
-- [Cookbook Notebooks](../cookbook/)
+### Example 5: Conflict Resolution
+Resolve conflicts in data from multiple sources:
+
+```python
+from semantica import Semantica
+from semantica.conflicts import ConflictResolver
+
+semantica = Semantica()
+
+# Build graph from multiple sources
+result = semantica.build_knowledge_base([
+ "source1.pdf",
+ "source2.pdf",
+ "source3.pdf"
+])
+
+# Detect conflicts
+conflicts = semantica.kg.detect_conflicts(result["knowledge_graph"])
+
+# Resolve conflicts
+resolver = ConflictResolver(default_strategy="voting")
+resolved = resolver.resolve_conflicts(conflicts)
+
+print(f"Resolved {len(resolved)} conflicts")
+```
+
+### Example 6: Custom Configuration
+
+Use custom configuration for specific use cases:
+
+```python
+from semantica import Semantica, Config
+
+# Custom configuration
+config = Config(
+ embeddings=True,
+ graph=True,
+ normalize=True,
+ conflict_resolution="highest_confidence"
+)
+
+semantica = Semantica(config=config)
+result = semantica.build_knowledge_base(["document.pdf"])
+```
+
+### Example 7: Incremental Graph Building
+
+Build knowledge graph incrementally:
+
+```python
+from semantica import Semantica
+
+semantica = Semantica()
+
+# Build graphs separately
+kg1 = semantica.kg.build_graph(["source1.pdf"])
+kg2 = semantica.kg.build_graph(["source2.pdf"])
+kg3 = semantica.kg.build_graph(["source3.pdf"])
+
+# Merge into unified graph
+merged_kg = semantica.kg.merge([kg1, kg2, kg3])
+
+print(f"Merged graph: {len(merged_kg['entities'])} entities")
+```
+
+### Example 8: Visualization
+
+Create interactive visualizations:
+
+```python
+from semantica import Semantica
+
+semantica = Semantica()
+
+# Build graph
+result = semantica.build_knowledge_base(["document.pdf"])
+kg = result["knowledge_graph"]
+
+# Visualize
+semantica.kg.visualize(kg, output_path="graph.html")
+
+# Also analyze
+analysis = semantica.kg.analyze(kg)
+print(f"Graph density: {analysis['density']}")
+print(f"Connected components: {analysis['components']}")
+```
+
+## Use Case Examples
+
+### Research Paper Analysis
+
+Extract knowledge from research papers:
+
+```python
+from semantica import Semantica
+
+semantica = Semantica()
+
+# Process research paper
+result = semantica.build_knowledge_base([
+ "papers/ai_research.pdf",
+ "papers/ml_survey.pdf"
+])
+
+kg = result["knowledge_graph"]
+
+# Find key concepts
+concepts = [e for e in kg["entities"] if e["type"] == "CONCEPT"]
+print(f"Found {len(concepts)} key concepts")
+```
+
+### Company Intelligence
+
+Build knowledge graph from company documents:
+
+```python
+from semantica import Semantica
+
+semantica = Semantica()
+
+# Company documents
+sources = [
+ "company/annual_report.pdf",
+ "company/press_releases/",
+ "company/website_content.html"
+]
+
+result = semantica.build_knowledge_base(sources)
+kg = result["knowledge_graph"]
+
+# Export for analysis
+semantica.export.to_json(kg, "company_intelligence.json")
+```
+
+### News Article Processing
+
+Process and analyze news articles:
+
+```python
+from semantica import Semantica
+
+semantica = Semantica()
+
+# News articles
+articles = [
+ "https://example.com/article1",
+ "https://example.com/article2",
+ "https://example.com/article3"
+]
+
+result = semantica.build_knowledge_base(articles)
+kg = result["knowledge_graph"]
+
+# Extract key entities
+people = [e for e in kg["entities"] if e["type"] == "PERSON"]
+organizations = [e for e in kg["entities"] if e["type"] == "ORGANIZATION"]
+
+print(f"People mentioned: {len(people)}")
+print(f"Organizations: {len(organizations)}")
+```
+
+## Interactive Examples
+
+For more interactive examples and tutorials, check out our [Cookbook](cookbook.md) with Jupyter notebooks covering:
+
+- **Introduction**: Getting started tutorials
+- **Advanced**: Advanced techniques and patterns
+- **Use Cases**: Real-world applications in various domains
+
+## More Resources
+
+- **[Quick Start Guide](quickstart.md)** - Step-by-step tutorial
+- **[API Reference](api.md)** - Complete API documentation
+- **[Cookbook](cookbook.md)** - Interactive Jupyter notebooks
+- **[Code Examples](../CodeExamples.md)** - Additional code samples
diff --git a/docs/faq.md b/docs/faq.md
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+# Frequently Asked Questions
+
+Common questions and answers about Semantica.
+
+## General Questions
+
+### What is Semantica?
+
+Semantica is an open-source framework for building semantic layers and knowledge graphs from unstructured data. It transforms raw data into structured, queryable knowledge that powers AI applications.
+
+### What can I use Semantica for?
+
+- Building knowledge graphs from documents
+- Creating semantic layers for AI applications
+- Extracting entities and relationships from text
+- Powering GraphRAG systems
+- Integrating data from multiple sources
+- Building AI agent memory systems
+
+### Is Semantica free?
+
+Yes! Semantica is 100% open source and free to use under the MIT License.
+
+## Installation
+
+### How do I install Semantica?
+
+```bash
+pip install semantica
+```
+
+See the [Installation Guide](installation.md) for detailed instructions.
+
+### What Python version do I need?
+
+Python 3.8 or higher. Python 3.11+ is recommended.
+
+### Do I need GPU?
+
+No, GPU is optional. Semantica works on CPU, but GPU acceleration is available for faster processing.
+
+## Usage
+
+### How do I get started?
+
+1. Install Semantica: `pip install semantica`
+2. Follow the [Quick Start Guide](quickstart.md)
+3. Try the [Examples](examples.md)
+
+### Can I process PDF files?
+
+Yes! Semantica supports PDF, DOCX, HTML, JSON, CSV, and many other formats.
+
+### How do I extract entities from text?
+
+```python
+from semantica import Semantica
+
+semantica = Semantica()
+result = semantica.semantic_extract.extract_entities("Your text here")
+entities = result["entities"]
+```
+
+### Can I use my own models?
+
+Yes, Semantica is extensible. You can plug in custom models for entity extraction, embeddings, etc.
+
+## Knowledge Graphs
+
+### What is a knowledge graph?
+
+A knowledge graph is a structured representation where entities (nodes) are connected by relationships (edges). It captures semantic meaning and relationships in data.
+
+### How do I build a knowledge graph?
+
+```python
+from semantica import Semantica
+
+semantica = Semantica()
+result = semantica.build_knowledge_base(["document.pdf"])
+kg = result["knowledge_graph"]
+```
+
+### Can I merge multiple knowledge graphs?
+
+Yes! Use the `merge` method:
+
+```python
+merged = semantica.kg.merge([kg1, kg2, kg3])
+```
+
+### How do I visualize a knowledge graph?
+
+```python
+semantica.kg.visualize(kg, output_path="graph.html")
+```
+
+## Conflict Resolution
+
+### What is conflict resolution?
+
+When the same entity appears in multiple sources with different information, conflict resolution determines which information to use.
+
+### What strategies are available?
+
+- **Voting**: Majority wins
+- **Credibility Weighted**: Weight by source credibility
+- **Most Recent**: Use latest information
+- **Highest Confidence**: Use highest confidence score
+- **First Seen**: Use first encountered value
+
+### How do I set a resolution strategy?
+
+```python
+from semantica.conflicts import ConflictResolver
+
+resolver = ConflictResolver(default_strategy="voting")
+```
+
+## Export & Integration
+
+### What formats can I export to?
+
+- RDF/XML
+- OWL (Ontology)
+- JSON
+- CSV
+- YAML
+- And more
+
+### Can I use Semantica with other tools?
+
+Yes! Semantica exports to standard formats that work with:
+- Neo4j
+- Graph databases
+- RDF stores
+- Vector databases
+- Any tool that accepts RDF/JSON/CSV
+
+## Performance
+
+### How fast is Semantica?
+
+Performance depends on:
+- Document size
+- Number of documents
+- Hardware (CPU/GPU)
+- Configuration options
+
+For typical documents, processing takes seconds to minutes.
+
+### Can I process large datasets?
+
+Yes, but consider:
+- Processing in batches
+- Using GPU acceleration
+- Incremental building
+- Optimizing configuration
+
+## Troubleshooting
+
+### Installation fails
+
+- Upgrade pip: `pip install --upgrade pip`
+- Use virtual environment
+- Check Python version: `python --version`
+
+### No entities extracted
+
+- Verify document contains text (not just images)
+- Check document format is supported
+- Review extraction configuration
+
+### Memory errors
+
+- Process documents one at a time
+- Reduce batch sizes
+- Use smaller models
+- Increase available RAM
+
+### Slow processing
+
+- Enable GPU if available
+- Process in smaller batches
+- Optimize configuration
+- Use faster models
+
+## Getting Help
+
+### Where can I get help?
+
+- **Documentation**: This site
+- **GitHub Issues**: [Report bugs](https://github.com/Hawksight-AI/semantica/issues)
+- **Discussions**: [Ask questions](https://github.com/Hawksight-AI/semantica/discussions)
+
+### How do I report a bug?
+
+Open an issue on [GitHub](https://github.com/Hawksight-AI/semantica/issues) with:
+- Description of the problem
+- Steps to reproduce
+- Expected vs actual behavior
+- Environment details
+
+### Can I contribute?
+
+Yes! We welcome contributions. See our [Contributing Guide](https://github.com/Hawksight-AI/semantica/blob/main/CONTRIBUTING.md).
+
+---
+
+Still have questions? Check the [API Reference](api.md) or [open an issue](https://github.com/Hawksight-AI/semantica/issues).
+
diff --git a/docs/getting-started.md b/docs/getting-started.md
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+++ b/docs/getting-started.md
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+# Getting Started
+
+Welcome to Semantica! This guide will help you get up and running quickly.
+
+## Choose Your Path
+
+=== "🚀 Quick Start (5 min)"
+
+ Get Semantica running in 5 minutes:
+
+ 1. **[Install Semantica](installation.md#basic-installation)**
+ 2. **[Run Your First Example](quickstart.md#step-2-your-first-knowledge-graph)**
+ 3. **[Explore Examples](examples.md)**
+
+ Perfect for: Trying Semantica quickly
+
+=== "📚 Complete Guide (30 min)"
+
+ Learn Semantica thoroughly:
+
+ 1. **[Installation](installation.md)** - Complete setup guide
+ 2. **[Quick Start](quickstart.md)** - Step-by-step tutorial
+ 3. **[Core Concepts](concepts.md)** - Understand the framework
+ 4. **[Examples](examples.md)** - Real-world use cases
+ 5. **[API Reference](api.md)** - Full API documentation
+
+ Perfect for: Learning the framework properly
+
+=== "🎓 Interactive Learning"
+
+ Learn by doing with Jupyter notebooks:
+
+ 1. **[Cookbook Overview](cookbook.md)** - Browse all tutorials
+ 2. **[Start with Introduction](cookbook.md#introduction)** - Beginner notebooks
+ 3. **[Try Use Cases](cookbook.md#use-cases)** - Domain-specific examples
+
+ Perfect for: Hands-on learners
+
+## What Can You Build?
+
+Semantica helps you transform unstructured data into intelligent knowledge:
+
+- **Knowledge Graphs** from documents, websites, databases
+- **Semantic Layers** for AI applications
+- **Entity & Relationship Extraction** from text
+- **Conflict Resolution** across multiple data sources
+- **GraphRAG Systems** for enhanced AI responses
+
+## Common Use Cases
+
+### Research & Analysis
+- Extract knowledge from research papers
+- Build domain-specific knowledge graphs
+- Analyze relationships in literature
+
+### Business Intelligence
+- Process company documents
+- Build organizational knowledge bases
+- Integrate multiple data sources
+
+### AI Applications
+- Power GraphRAG systems
+- Enhance AI agent memory
+- Build semantic search systems
+
+## Next Steps
+
+Once you're set up:
+
+1. **[Install Semantica](installation.md)** if you haven't already
+2. **[Follow Quick Start](quickstart.md)** to build your first KG
+3. **[Explore Examples](examples.md)** for inspiration
+4. **[Check Cookbook](cookbook.md)** for interactive tutorials
+
+## Need Help?
+
+- **Installation Issues?** → [Troubleshooting Guide](installation.md#troubleshooting)
+- **First Time User?** → [Quick Start Guide](quickstart.md)
+- **Looking for Examples?** → [Examples Page](examples.md)
+- **API Questions?** → [API Reference](api.md)
+
+---
+
+Ready to start? Head to the [Installation Guide](installation.md)!
+
diff --git a/docs/index.md b/docs/index.md
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--- a/docs/index.md
+++ b/docs/index.md
@@ -1,95 +1,410 @@
-# 🧠 Semantica
+# Welcome to Semantica
-**Open Source Framework for Semantic Intelligence & Knowledge Engineering**
+**Transform chaotic data into intelligent knowledge.**
-> **Transform chaotic data into intelligent knowledge.**
+Semantica is an open-source framework for building semantic layers and knowledge graphs that power the next generation of AI applications.
-