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Refactor cookbook documentation: Improve structure with grid cards and better categorization

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@@ -10,25 +10,81 @@ This collection of Jupyter notebooks is designed to take you from a beginner to
Start here if you are new to the framework. These notebooks cover the essentials.
- **[Welcome to Semantica](cookbook/introduction/Welcome_to_Semantica.ipynb)**: An interactive introduction to the framework.
- **[Configuration Basics](cookbook/introduction/Configuration_Basics.ipynb)**: Learn how to configure API keys and settings.
- **[Your First Knowledge Graph](cookbook/introduction/Your_First_Knowledge_Graph.ipynb)**: Build a simple graph from scratch.
- **[Data Ingestion](cookbook/introduction/Data_Ingestion.ipynb)**: Loading data from files and web sources.
- **[Document Parsing](cookbook/introduction/Document_Parsing.ipynb)**: Extracting text from PDFs, DOCX, and more.
- **[Data Normalization](cookbook/introduction/Data_Normalization.ipynb)**: Cleaning and preparing text.
- **[Entity Extraction](cookbook/introduction/Entity_Extraction.ipynb)**: Identifying people, places, and organizations.
- **[Relation Extraction](cookbook/introduction/Relation_Extraction.ipynb)**: Finding connections between entities.
- **[Embedding Generation](cookbook/introduction/Embedding_Generation.ipynb)**: Creating vector representations.
- **[Vector Store](cookbook/introduction/Vector_Store.ipynb)**: Storing and searching vectors.
- **[Graph Store](cookbook/introduction/Graph_Store.ipynb)**: Storing graphs in Neo4j, KuzuDB, or FalkorDB.
- **[Ontology](cookbook/introduction/Ontology.ipynb)**: Defining the structure of your knowledge.
- **[Conflict Detection](cookbook/introduction/Conflict_Detection.ipynb)**: Handling contradictory information.
- **[Deduplication](cookbook/introduction/Deduplication.ipynb)**: Merging duplicate entities.
- **[Building Knowledge Graphs](cookbook/introduction/Building_Knowledge_Graphs.ipynb)**: Putting it all together.
- **[Graph Analytics](cookbook/introduction/Graph_Analytics.ipynb)**: Analyzing graph structure.
- **[Graph Quality](cookbook/introduction/Graph_Quality.ipynb)**: Ensuring data quality.
- **[Visualization](cookbook/introduction/Visualization.ipynb)**: Visualizing your graphs.
- **[Export](cookbook/introduction/Export.ipynb)**: Exporting data to other formats.
<div class="grid cards" markdown>
- :material-hand-wave: **Welcome to Semantica**
---
An interactive introduction to the framework.
[Open Notebook](cookbook/introduction/Welcome_to_Semantica.ipynb)
- :material-cog: **Configuration Basics**
---
Learn how to configure API keys and settings.
[Open Notebook](cookbook/introduction/Configuration_Basics.ipynb)
- :material-graph: **Your First Knowledge Graph**
---
Build a simple graph from scratch.
[Open Notebook](cookbook/introduction/Your_First_Knowledge_Graph.ipynb)
- :material-database-import: **Data Ingestion**
---
Loading data from files and web sources.
[Open Notebook](cookbook/introduction/Data_Ingestion.ipynb)
- :material-file-document-outline: **Document Parsing**
---
Extracting text from PDFs, DOCX, and more.
[Open Notebook](cookbook/introduction/Document_Parsing.ipynb)
- :material-broom: **Data Normalization**
---
Cleaning and preparing text.
[Open Notebook](cookbook/introduction/Data_Normalization.ipynb)
- :material-account-search: **Entity Extraction**
---
Identifying people, places, and organizations.
[Open Notebook](cookbook/introduction/Entity_Extraction.ipynb)
- :material-relation-many-to-many: **Relation Extraction**
---
Finding connections between entities.
[Open Notebook](cookbook/introduction/Relation_Extraction.ipynb)
- :material-vector-square: **Embedding Generation**
---
Creating vector representations.
[Open Notebook](cookbook/introduction/Embedding_Generation.ipynb)
- :material-database-search: **Vector Store**
---
Storing and searching vectors.
[Open Notebook](cookbook/introduction/Vector_Store.ipynb)
- :material-database-settings: **Graph Store**
---
Storing graphs in Neo4j, KuzuDB, or FalkorDB.
[Open Notebook](cookbook/introduction/Graph_Store.ipynb)
- :material-sitemap: **Ontology**
---
Defining the structure of your knowledge.
[Open Notebook](cookbook/introduction/Ontology.ipynb)
</div>
---
@@ -36,18 +92,69 @@ Start here if you are new to the framework. These notebooks cover the essentials
Deep dive into advanced features and customization.
- **[Advanced Extraction](cookbook/advanced/Advanced_Extraction.ipynb)**: Techniques for complex entity and relation extraction.
- **[Advanced Graph Analytics](cookbook/advanced/Advanced_Graph_Analytics.ipynb)**: In-depth graph analysis algorithms.
- **[Complete Visualization Suite](cookbook/advanced/Complete_Visualization_Suite.ipynb)**: Comprehensive guide to visualization tools.
- **[Conflict Resolution Strategies](cookbook/advanced/Conflict_Resolution_Strategies.ipynb)**: Advanced methods for resolving data conflicts.
- **[Multi-Format Export](cookbook/advanced/Multi_Format_Export.ipynb)**: Exporting data to various formats.
- **[Multi-Source Data Integration](cookbook/advanced/Multi_Source_Data_Integration.ipynb)**: Integrating data from disparate sources.
- **[Pipeline Orchestration](cookbook/advanced/Pipeline_Orchestration.ipynb)**: Building and managing complex pipelines.
- **[Reasoning and Inference](cookbook/advanced/Reasoning_and_Inference.ipynb)**: Applying logical reasoning to your graph.
- **[Semantic Layer Construction](cookbook/advanced/Semantic_Layer_Construction.ipynb)**: Building a robust semantic layer.
- **[Temporal Knowledge Graphs](cookbook/advanced/Temporal_Knowledge_Graphs.ipynb)**: Working with time-aware graphs.
- **[Text Chunking Strategies](cookbook/advanced/Text_Chunking_Strategies.ipynb)**: Optimizing text processing.
- **[Unstructured to Ontology](cookbook/advanced/Unstructured_to_Ontology.ipynb)**: Automatically generating ontologies from text.
<div class="grid cards" markdown>
- :material-flask: **Advanced Extraction**
---
Techniques for complex entity and relation extraction.
[Open Notebook](cookbook/advanced/Advanced_Extraction.ipynb)
- :material-chart-network: **Advanced Graph Analytics**
---
In-depth graph analysis algorithms.
[Open Notebook](cookbook/advanced/Advanced_Graph_Analytics.ipynb)
- :material-monitor-dashboard: **Complete Visualization Suite**
---
Comprehensive guide to visualization tools.
[Open Notebook](cookbook/advanced/Complete_Visualization_Suite.ipynb)
- :material-scale-balance: **Conflict Resolution**
---
Advanced methods for resolving data conflicts.
[Open Notebook](cookbook/advanced/Conflict_Resolution_Strategies.ipynb)
- :material-export: **Multi-Format Export**
---
Exporting data to various formats.
[Open Notebook](cookbook/advanced/Multi_Format_Export.ipynb)
- :material-source-merge: **Multi-Source Integration**
---
Integrating data from disparate sources.
[Open Notebook](cookbook/advanced/Multi_Source_Data_Integration.ipynb)
- :material-pipe: **Pipeline Orchestration**
---
Building and managing complex pipelines.
[Open Notebook](cookbook/advanced/Pipeline_Orchestration.ipynb)
- :material-brain: **Reasoning and Inference**
---
Applying logical reasoning to your graph.
[Open Notebook](cookbook/advanced/Reasoning_and_Inference.ipynb)
- :material-layers: **Semantic Layer Construction**
---
Building a robust semantic layer.
[Open Notebook](cookbook/advanced/Semantic_Layer_Construction.ipynb)
- :material-clock-outline: **Temporal Knowledge Graphs**
---
Working with time-aware graphs.
[Open Notebook](cookbook/advanced/Temporal_Knowledge_Graphs.ipynb)
</div>
---
@@ -56,65 +163,154 @@ Deep dive into advanced features and customization.
Real-world examples and applications across various industries.
### Advanced RAG
- **[GraphRAG Complete](cookbook/use_cases/advanced_rag/GraphRAG_Complete.ipynb)**: End-to-end implementation of Graph Retrieval Augmented Generation.
<div class="grid cards" markdown>
- :material-robot: **GraphRAG Complete**
---
End-to-end implementation of Graph Retrieval Augmented Generation.
[Open Notebook](cookbook/use_cases/advanced_rag/GraphRAG_Complete.ipynb)
</div>
### Biomedical
- **[Drug Discovery Pipeline](cookbook/use_cases/biomedical/Drug_Discovery_Pipeline.ipynb)**: Accelerating drug discovery with knowledge graphs.
- **[Genomic Variant Analysis](cookbook/use_cases/biomedical/Genomic_Variant_Analysis.ipynb)**: Analyzing genomic variants and their implications.
### Blockchain
- **[DeFi Protocol Intelligence](cookbook/use_cases/blockchain/DeFi_Protocol_Intelligence.ipynb)**: Analyzing decentralized finance protocols.
- **[Transaction Network Analysis](cookbook/use_cases/blockchain/Transaction_Network_Analysis.ipynb)**: Investigating blockchain transaction networks.
<div class="grid cards" markdown>
- :material-pill: **Drug Discovery Pipeline**
---
Accelerating drug discovery with knowledge graphs.
[Open Notebook](cookbook/use_cases/biomedical/Drug_Discovery_Pipeline.ipynb)
- :material-dna: **Genomic Variant Analysis**
---
Analyzing genomic variants and their implications.
[Open Notebook](cookbook/use_cases/biomedical/Genomic_Variant_Analysis.ipynb)
</div>
### Blockchain & Finance
<div class="grid cards" markdown>
- :material-bitcoin: **DeFi Protocol Intelligence**
---
Analyzing decentralized finance protocols.
[Open Notebook](cookbook/use_cases/blockchain/DeFi_Protocol_Intelligence.ipynb)
- :material-finance: **Financial Data Integration**
---
Merging financial data from multiple sources.
[Open Notebook](cookbook/use_cases/finance/Financial_Data_Integration.ipynb)
- :material-incognito: **Fraud Detection**
---
Identifying fraudulent activities and patterns.
[Open Notebook](cookbook/use_cases/finance/Fraud_Detection.ipynb)
- :material-chart-line: **Market Intelligence**
---
Gathering and analyzing market intelligence.
[Open Notebook](cookbook/use_cases/finance/Market_Intelligence.ipynb)
</div>
### Cybersecurity
- **[Anomaly Detection Real-Time](cookbook/use_cases/cybersecurity/Anomaly_Detection_Real_Time.ipynb)**: Detecting anomalies in real-time streams.
- **[Incident Analysis](cookbook/use_cases/cybersecurity/Incident_Analysis.ipynb)**: Analyzing security incidents and breaches.
- **[Threat Correlation](cookbook/use_cases/cybersecurity/Threat_Correlation.ipynb)**: Correlating threats across different vectors.
- **[Threat Intelligence Hybrid RAG](cookbook/use_cases/cybersecurity/Threat_Intelligence_Hybrid_RAG.ipynb)**: Combining RAG with threat intelligence.
- **[Threat Intelligence Integration](cookbook/use_cases/cybersecurity/Threat_Intelligence_Integration.ipynb)**: Integrating threat feeds into a knowledge graph.
- **[Vulnerability Tracking](cookbook/use_cases/cybersecurity/Vulnerability_Tracking.ipynb)**: Tracking and managing system vulnerabilities.
### Finance
- **[Financial Data Integration](cookbook/use_cases/finance/Financial_Data_Integration.ipynb)**: Merging financial data from multiple sources.
- **[Financial Reports Analysis](cookbook/use_cases/finance/Financial_Reports_Analysis.ipynb)**: Extracting insights from financial reports.
- **[Fraud Detection](cookbook/use_cases/finance/Fraud_Detection.ipynb)**: Identifying fraudulent activities and patterns.
- **[Investment Analysis Hybrid RAG](cookbook/use_cases/finance/Investment_Analysis_Hybrid_RAG.ipynb)**: AI-powered investment analysis.
- **[Market Intelligence](cookbook/use_cases/finance/Market_Intelligence.ipynb)**: Gathering and analyzing market intelligence.
- **[Regulatory Compliance](cookbook/use_cases/finance/Regulatory_Compliance.ipynb)**: Ensuring compliance with financial regulations.
<div class="grid cards" markdown>
- :material-shield-alert: **Anomaly Detection**
---
Detecting anomalies in real-time streams.
[Open Notebook](cookbook/use_cases/cybersecurity/Anomaly_Detection_Real_Time.ipynb)
- :material-shield-search: **Incident Analysis**
---
Analyzing security incidents and breaches.
[Open Notebook](cookbook/use_cases/cybersecurity/Incident_Analysis.ipynb)
- :material-shield-link-variant: **Threat Correlation**
---
Correlating threats across different vectors.
[Open Notebook](cookbook/use_cases/cybersecurity/Threat_Correlation.ipynb)
</div>
### Healthcare
- **[Clinical Reports Processing](cookbook/use_cases/healthcare/Clinical_Reports_Processing.ipynb)**: Processing and structuring clinical reports.
- **[Disease Network Analysis](cookbook/use_cases/healthcare/Disease_Network_Analysis.ipynb)**: Analyzing disease networks and comorbidities.
- **[Drug Interactions Analysis](cookbook/use_cases/healthcare/Drug_Interactions_Analysis.ipynb)**: Identifying potential drug interactions.
- **[Healthcare GraphRAG Hybrid](cookbook/use_cases/healthcare/Healthcare_GraphRAG_Hybrid.ipynb)**: Hybrid RAG for healthcare applications.
- **[Medical Database Integration](cookbook/use_cases/healthcare/Medical_Database_Integration.ipynb)**: Integrating medical databases.
- **[Medical Literature GraphRAG](cookbook/use_cases/healthcare/Medical_Literature_GraphRAG.ipynb)**: Querying medical literature with GraphRAG.
- **[Patient Records Temporal](cookbook/use_cases/healthcare/Patient_Records_Temporal.ipynb)**: Analyzing patient records over time.
<div class="grid cards" markdown>
- :material-hospital-box: **Clinical Reports**
---
Processing and structuring clinical reports.
[Open Notebook](cookbook/use_cases/healthcare/Clinical_Reports_Processing.ipynb)
- :material-virus: **Disease Network Analysis**
---
Analyzing disease networks and comorbidities.
[Open Notebook](cookbook/use_cases/healthcare/Disease_Network_Analysis.ipynb)
- :material-account-heart: **Patient Records Temporal**
---
Analyzing patient records over time.
[Open Notebook](cookbook/use_cases/healthcare/Patient_Records_Temporal.ipynb)
</div>
### Intelligence
- **[Network Analysis Intelligence Reports](cookbook/use_cases/intelligence/Network_Analysis_Intelligence_Reports.ipynb)**: Analyzing intelligence reports for network insights.
- **[Criminal Network Analysis](cookbook/use_cases/intelligence/Criminal_Network_Analysis.ipynb)**: Analyze criminal networks with graph analytics, key player detection, and intelligence reporting using agent-based workflows and MCP integration.
- **[Law Enforcement and Forensics](cookbook/use_cases/intelligence/Law_Enforcement_Forensics.ipynb)**: Process forensic evidence, analyze case files, build temporal case timelines, and generate forensic analysis reports with agent-based workflows.
- **[Intelligence Analysis](cookbook/use_cases/intelligence/Intelligence_Analysis.ipynb)**: Comprehensive intelligence analysis using Orchestrator-Worker pattern with complete graph analytics, hybrid RAG, ontology building, threat assessment, and geospatial intelligence.
### Renewable Energy
- **[Energy Market Analysis](cookbook/use_cases/renewable_energy/Energy_Market_Analysis.ipynb)**: Analyzing trends in the energy market.
- **[Environmental Impact](cookbook/use_cases/renewable_energy/Environmental_Impact.ipynb)**: Assessing environmental impact.
- **[Grid Management](cookbook/use_cases/renewable_energy/Grid_Management.ipynb)**: Optimizing power grid management.
- **[Resource Optimization](cookbook/use_cases/renewable_energy/Resource_Optimization.ipynb)**: Optimizing renewable resources.
- **[Supply Chain Analysis](cookbook/use_cases/renewable_energy/Supply_Chain_Analysis.ipynb)**: Analyzing the renewable energy supply chain.
<div class="grid cards" markdown>
### Supply Chain
- **[Supply Chain Data Integration](cookbook/use_cases/supply_chain/Supply_Chain_Data_Integration.ipynb)**: Integrating supply chain data.
- **[Supply Chain Risk Management](cookbook/use_cases/supply_chain/Supply_Chain_Risk_Management.ipynb)**: Managing and mitigating supply chain risks.
- :material-account-network: **Criminal Network Analysis**
---
Analyze criminal networks with graph analytics.
[Open Notebook](cookbook/use_cases/intelligence/Criminal_Network_Analysis.ipynb)
### Trading
- **[Market Data Analysis](cookbook/use_cases/trading/Market_Data_Analysis.ipynb)**: Analyzing trading market data.
- **[News Sentiment Analysis](cookbook/use_cases/trading/News_Sentiment_Analysis.ipynb)**: Analyzing news sentiment for trading signals.
- **[Real Time Market Data](cookbook/use_cases/trading/Real_Time_Market_Data.ipynb)**: Processing real-time market data.
- **[Real Time Monitoring](cookbook/use_cases/trading/Real_Time_Monitoring.ipynb)**: Monitoring trading systems in real-time.
- **[Risk Assessment](cookbook/use_cases/trading/Risk_Assessment.ipynb)**: Assessing trading risks.
- **[Strategy Backtesting](cookbook/use_cases/trading/Strategy_Backtesting.ipynb)**: Backtesting trading strategies.
- :material-gavel: **Law Enforcement**
---
Process forensic evidence and analyze case files.
[Open Notebook](cookbook/use_cases/intelligence/Law_Enforcement_Forensics.ipynb)
- :material-eye: **Intelligence Analysis**
---
Comprehensive intelligence analysis using Orchestrator-Worker pattern.
[Open Notebook](cookbook/use_cases/intelligence/Intelligence_Analysis.ipynb)
</div>
### Renewable Energy & Supply Chain
<div class="grid cards" markdown>
- :material-wind-turbine: **Energy Market Analysis**
---
Analyzing trends in the energy market.
[Open Notebook](cookbook/use_cases/renewable_energy/Energy_Market_Analysis.ipynb)
- :material-truck-delivery: **Supply Chain Integration**
---
Integrating supply chain data.
[Open Notebook](cookbook/use_cases/supply_chain/Supply_Chain_Data_Integration.ipynb)
</div>
---