mirror of
https://github.com/semantica-agi/semantica.git
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Update cookbooks: remove version checks and ensure pip install
This commit is contained in:
KaifAhmad1
@@ -1,297 +1,286 @@
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{
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"cells": [
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"[](https://colab.research.google.com/github/Hawksight-AI/semantica/blob/main/cookbook/advanced/12_Unstructured_to_Ontology.ipynb)\n",
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"\n",
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"# Advanced: Unstructured Text to Ontology\n",
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"\n",
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"Welcome to the advanced guide on extracting structured ontologies from unstructured text. This notebook explores two powerful paradigms available in Semantica:\n",
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"\n",
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"1. **Classical NLP Pipeline**: Using Named Entity Recognition (NER) and Relation Extraction.\n",
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"2. **Generative AI Pipeline**: Using Large Language Models (LLMs) for direct conceptual modeling.\n",
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"\n",
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"We will compare both approaches, visualize the results, and validate the generated ontologies.\n",
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"\n",
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"**Documentation**: [API Reference](https://semantica.readthedocs.io/reference/ontology/)\n",
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"\n",
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"## Setup and Installation\n",
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"\n",
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"Ensure you have Semantica installed with all dependencies."
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"%pip install -U \"semantica[all]\"\n",
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"import semantica\n",
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"print(semantica.__version__)\n"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"# !pip install semantica[all]\n",
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"\n",
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"from semantica.utils.logging import get_logger\n",
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"\n",
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"logger = get_logger(\"unstructured_guide\")\n",
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"print(\"Environment setup complete.\")"
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]
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},
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"---\n",
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"\n",
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"## The Input Text\n",
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"\n",
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"We will use a rich paragraph of text describing a technology company to test both extraction methods."
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"text_corpus = \"\"\"\n",
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"QuantumDynamics is a leading AI research lab founded by Dr. Elena Rostova in 2018. \n",
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"The lab is headquartered in Zurich, Switzerland, and focuses on quantum computing algorithms. \n",
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"Dr. Rostova serves as the Chief Scientist. \n",
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"The lab has released products like the Q-1 Processor and the NeuralBridge SDK. \n",
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"QuantumDynamics collaborates with major universities such as MIT and ETH Zurich.\n",
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"\"\"\""
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]
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},
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"---\n",
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"\n",
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"## Approach 1: The Classical NLP Pipeline\n",
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"\n",
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"This approach builds the ontology from the bottom up:\n",
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"1. **Extract Entities**: Identify nouns/proper nouns (e.g., \"QuantumDynamics\", \"Zurich\").\n",
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"2. **Extract Relations**: Identify verbs connecting them (e.g., \"headquartered in\").\n",
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"3. **Generate Ontology**: Map these triplets to Classes and Properties.\n",
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"\n",
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"**Pros**: Deterministic, traceable, works offline.\n",
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"**Cons**: Dependent on the underlying NLP model's vocabulary and flexibility."
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"from semantica.semantic_extract import NERExtractor, RelationExtractor\n",
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"from semantica.ontology import OntologyGenerator, OntologyOptimizer\n",
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"\n",
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"# 1. Initialize Extractors\n",
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"ner = NERExtractor()\n",
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"re = RelationExtractor()\n",
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"\n",
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"# 2. Extract Entities\n",
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"print(\"Extracting entities...\")\n",
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"entities = ner.extract(text_corpus)\n",
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"print(f\"Found {len(entities)} entities: {[e['text'] for e in entities]}\")\n",
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"\n",
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"# 3. Extract Relationships\n",
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"print(\"Extracting relationships...\")\n",
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"relationships = re.extract(text_corpus, entities)\n",
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"for r in relationships:\n",
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" print(f\" - {r['source']} -> {r['type']} -> {r['target']}\")\n",
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"\n",
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"# 4. Generate Structure\n",
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"generator = OntologyGenerator()\n",
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"nlp_ontology = generator.generate(entities, relationships, name=\"QuantumOntologyNLP\")\n",
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"\n",
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"# 5. Optimize (Clean up)\n",
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"optimizer = OntologyOptimizer()\n",
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"nlp_ontology = optimizer.optimize_ontology(nlp_ontology, remove_redundancy=True)\n",
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"\n",
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"print(f\"\\nGenerated NLP Ontology with {len(nlp_ontology['classes'])} classes and {len(nlp_ontology['properties'])} properties.\")"
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]
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},
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"---\n",
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"\n",
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"## Approach 2: The Generative AI Pipeline (LLM)\n",
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"\n",
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"This approach uses a Large Language Model to \"read\" the text and directly propose a schema.\n",
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"\n",
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"**Pros**: Context-aware, can handle ambiguity, generates human-like class names.\n",
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"**Cons**: Non-deterministic, requires API access.\n",
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"\n",
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"*Note: This step requires a configured LLM provider (e.g., OpenAI).* "
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"from semantica.ontology import LLMOntologyGenerator\n",
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"\n",
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"try:\n",
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" # Initialize LLM Generator (ensure OPENAI_API_KEY is set in env)\n",
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" llm_gen = LLMOntologyGenerator(provider=\"openai\", model=\"gpt-4\")\n",
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" \n",
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" print(\"Generating ontology with LLM...\")\n",
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" llm_ontology = llm_gen.generate_ontology_from_text(\n",
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" text=text_corpus,\n",
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" name=\"QuantumOntologyLLM\"\n",
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" )\n",
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" \n",
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" print(f\"Generated LLM Ontology with {len(llm_ontology['classes'])} classes and {len(llm_ontology['properties'])} properties.\")\n",
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" print(\"Classes detected:\", [c['name'] for c in llm_ontology['classes']])\n",
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" \n",
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"except Exception as e:\n",
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" print(f\"Skipping LLM generation: {e}\")\n",
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" llm_ontology = None"
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]
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},
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"---\n",
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"\n",
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"## Comparing Results with Visualization\n",
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"\n",
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"Let's visualize both ontologies side-by-side (if available) to see the difference in structure. The NLP model tends to be more literal, while the LLM model tends to be more conceptual."
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"from semantica.visualization import OntologyVisualizer\n",
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"\n",
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"visualizer = OntologyVisualizer()\n",
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"\n",
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"print(\"--- NLP Approach Visualization ---\")\n",
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"fig_nlp = visualizer.visualize_structure(nlp_ontology, output=\"interactive\")\n",
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"if fig_nlp: fig_nlp.show()\n",
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"\n",
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"if llm_ontology:\n",
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" print(\"--- LLM Approach Visualization ---\")\n",
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" fig_llm = visualizer.visualize_structure(llm_ontology, output=\"interactive\")\n",
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" if fig_llm: fig_llm.show()"
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]
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},
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"---\n",
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"\n",
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"## Validation\n",
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"\n",
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"No matter the method, validation is crucial. We check for structural integrity and logical consistency."
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"from semantica.ontology import OntologyValidator\n",
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"\n",
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"validator = OntologyValidator()\n",
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"\n",
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"def print_report(name, ont):\n",
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" if not ont: return\n",
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" res = validator.validate_ontology(ont)\n",
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" print(f\"[{name}] Valid: {res.valid}, Errors: {len(res.errors)}\")\n",
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" if res.metrics:\n",
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" print(f\" Depth: {res.metrics.get('hierarchy_depth')}, Concepts: {res.metrics.get('class_count')}\")\n",
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"\n",
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"print_report(\"Classical NLP\", nlp_ontology)\n",
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"print_report(\"Generative AI\", llm_ontology)"
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]
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},
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"---\n",
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"\n",
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"## Export to OWL\n",
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"\n",
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"Finally, we choose the best model (or merge them using `ReuseManager`, covered in other guides) and export it."
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"from semantica.export import OWLExporter\n",
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"\n",
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"exporter = OWLExporter()\n",
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"\n",
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"# Export the NLP ontology by default, or the LLM one if preferred\n",
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"target_ontology = llm_ontology if llm_ontology else nlp_ontology\n",
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"\n",
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"output_file = \"quantum_ontology.ttl\"\n",
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"exporter.export(target_ontology, output_file, format=\"turtle\")\n",
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"print(f\"Successfully exported ontology to {output_file}\")"
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]
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},
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"## Summary\n",
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"\n",
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"You have learned to:\n",
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"1. **Extract Ontologies Programmatically**: Using `NERExtractor` for reliable, data-driven modeling.\n",
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"2. **Generate Ontologies with AI**: Using `LLMOntologyGenerator` for conceptual, high-level modeling.\n",
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"3. **Visualize and Compare**: Using `OntologyVisualizer` to inspect the structural differences.\n",
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"4. **Validate and Export**: Ensuring quality before saving to OWL standards."
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]
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}
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],
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"metadata": {
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"kernelspec": {
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"display_name": "Python 3",
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"language": "python",
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"name": "python3"
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},
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"language_info": {
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"codemirror_mode": {
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"name": "ipython",
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"version": 3
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},
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"file_extension": ".py",
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"mimetype": "text/x-python",
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.8.10"
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}
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},
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"nbformat": 4,
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"nbformat_minor": 5
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}
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"cells": [
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": [
|
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"[](https://colab.research.google.com/github/Hawksight-AI/semantica/blob/main/cookbook/advanced/12_Unstructured_to_Ontology.ipynb)\n",
|
||||
"\n",
|
||||
"# Advanced: Unstructured Text to Ontology\n",
|
||||
"\n",
|
||||
"Welcome to the advanced guide on extracting structured ontologies from unstructured text. This notebook explores two powerful paradigms available in Semantica:\n",
|
||||
"\n",
|
||||
"1. **Classical NLP Pipeline**: Using Named Entity Recognition (NER) and Relation Extraction.\n",
|
||||
"2. **Generative AI Pipeline**: Using Large Language Models (LLMs) for direct conceptual modeling.\n",
|
||||
"\n",
|
||||
"We will compare both approaches, visualize the results, and validate the generated ontologies.\n",
|
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"\n",
|
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"**Documentation**: [API Reference](https://semantica.readthedocs.io/reference/ontology/)\n",
|
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"\n",
|
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"## Setup and Installation\n",
|
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"\n",
|
||||
"Ensure you have Semantica installed with all dependencies."
|
||||
]
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},
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{
|
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
|
||||
"# !pip install semantica[all]\n",
|
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"\n",
|
||||
"from semantica.utils.logging import get_logger\n",
|
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"\n",
|
||||
"logger = get_logger(\"unstructured_guide\")\n",
|
||||
"print(\"Environment setup complete.\")"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
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"metadata": {},
|
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"source": [
|
||||
"---\n",
|
||||
"\n",
|
||||
"## The Input Text\n",
|
||||
"\n",
|
||||
"We will use a rich paragraph of text describing a technology company to test both extraction methods."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"text_corpus = \"\"\"\n",
|
||||
"QuantumDynamics is a leading AI research lab founded by Dr. Elena Rostova in 2018. \n",
|
||||
"The lab is headquartered in Zurich, Switzerland, and focuses on quantum computing algorithms. \n",
|
||||
"Dr. Rostova serves as the Chief Scientist. \n",
|
||||
"The lab has released products like the Q-1 Processor and the NeuralBridge SDK. \n",
|
||||
"QuantumDynamics collaborates with major universities such as MIT and ETH Zurich.\n",
|
||||
"\"\"\""
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"---\n",
|
||||
"\n",
|
||||
"## Approach 1: The Classical NLP Pipeline\n",
|
||||
"\n",
|
||||
"This approach builds the ontology from the bottom up:\n",
|
||||
"1. **Extract Entities**: Identify nouns/proper nouns (e.g., \"QuantumDynamics\", \"Zurich\").\n",
|
||||
"2. **Extract Relations**: Identify verbs connecting them (e.g., \"headquartered in\").\n",
|
||||
"3. **Generate Ontology**: Map these triplets to Classes and Properties.\n",
|
||||
"\n",
|
||||
"**Pros**: Deterministic, traceable, works offline.\n",
|
||||
"**Cons**: Dependent on the underlying NLP model's vocabulary and flexibility."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from semantica.semantic_extract import NERExtractor, RelationExtractor\n",
|
||||
"from semantica.ontology import OntologyGenerator, OntologyOptimizer\n",
|
||||
"\n",
|
||||
"# 1. Initialize Extractors\n",
|
||||
"ner = NERExtractor()\n",
|
||||
"re = RelationExtractor()\n",
|
||||
"\n",
|
||||
"# 2. Extract Entities\n",
|
||||
"print(\"Extracting entities...\")\n",
|
||||
"entities = ner.extract(text_corpus)\n",
|
||||
"print(f\"Found {len(entities)} entities: {[e['text'] for e in entities]}\")\n",
|
||||
"\n",
|
||||
"# 3. Extract Relationships\n",
|
||||
"print(\"Extracting relationships...\")\n",
|
||||
"relationships = re.extract(text_corpus, entities)\n",
|
||||
"for r in relationships:\n",
|
||||
" print(f\" - {r['source']} -> {r['type']} -> {r['target']}\")\n",
|
||||
"\n",
|
||||
"# 4. Generate Structure\n",
|
||||
"generator = OntologyGenerator()\n",
|
||||
"nlp_ontology = generator.generate(entities, relationships, name=\"QuantumOntologyNLP\")\n",
|
||||
"\n",
|
||||
"# 5. Optimize (Clean up)\n",
|
||||
"optimizer = OntologyOptimizer()\n",
|
||||
"nlp_ontology = optimizer.optimize_ontology(nlp_ontology, remove_redundancy=True)\n",
|
||||
"\n",
|
||||
"print(f\"\\nGenerated NLP Ontology with {len(nlp_ontology['classes'])} classes and {len(nlp_ontology['properties'])} properties.\")"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"---\n",
|
||||
"\n",
|
||||
"## Approach 2: The Generative AI Pipeline (LLM)\n",
|
||||
"\n",
|
||||
"This approach uses a Large Language Model to \"read\" the text and directly propose a schema.\n",
|
||||
"\n",
|
||||
"**Pros**: Context-aware, can handle ambiguity, generates human-like class names.\n",
|
||||
"**Cons**: Non-deterministic, requires API access.\n",
|
||||
"\n",
|
||||
"*Note: This step requires a configured LLM provider (e.g., OpenAI).* "
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from semantica.ontology import LLMOntologyGenerator\n",
|
||||
"\n",
|
||||
"try:\n",
|
||||
" # Initialize LLM Generator (ensure OPENAI_API_KEY is set in env)\n",
|
||||
" llm_gen = LLMOntologyGenerator(provider=\"openai\", model=\"gpt-4\")\n",
|
||||
" \n",
|
||||
" print(\"Generating ontology with LLM...\")\n",
|
||||
" llm_ontology = llm_gen.generate_ontology_from_text(\n",
|
||||
" text=text_corpus,\n",
|
||||
" name=\"QuantumOntologyLLM\"\n",
|
||||
" )\n",
|
||||
" \n",
|
||||
" print(f\"Generated LLM Ontology with {len(llm_ontology['classes'])} classes and {len(llm_ontology['properties'])} properties.\")\n",
|
||||
" print(\"Classes detected:\", [c['name'] for c in llm_ontology['classes']])\n",
|
||||
" \n",
|
||||
"except Exception as e:\n",
|
||||
" print(f\"Skipping LLM generation: {e}\")\n",
|
||||
" llm_ontology = None"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"---\n",
|
||||
"\n",
|
||||
"## Comparing Results with Visualization\n",
|
||||
"\n",
|
||||
"Let's visualize both ontologies side-by-side (if available) to see the difference in structure. The NLP model tends to be more literal, while the LLM model tends to be more conceptual."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from semantica.visualization import OntologyVisualizer\n",
|
||||
"\n",
|
||||
"visualizer = OntologyVisualizer()\n",
|
||||
"\n",
|
||||
"print(\"--- NLP Approach Visualization ---\")\n",
|
||||
"fig_nlp = visualizer.visualize_structure(nlp_ontology, output=\"interactive\")\n",
|
||||
"if fig_nlp: fig_nlp.show()\n",
|
||||
"\n",
|
||||
"if llm_ontology:\n",
|
||||
" print(\"--- LLM Approach Visualization ---\")\n",
|
||||
" fig_llm = visualizer.visualize_structure(llm_ontology, output=\"interactive\")\n",
|
||||
" if fig_llm: fig_llm.show()"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"---\n",
|
||||
"\n",
|
||||
"## Validation\n",
|
||||
"\n",
|
||||
"No matter the method, validation is crucial. We check for structural integrity and logical consistency."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from semantica.ontology import OntologyValidator\n",
|
||||
"\n",
|
||||
"validator = OntologyValidator()\n",
|
||||
"\n",
|
||||
"def print_report(name, ont):\n",
|
||||
" if not ont: return\n",
|
||||
" res = validator.validate_ontology(ont)\n",
|
||||
" print(f\"[{name}] Valid: {res.valid}, Errors: {len(res.errors)}\")\n",
|
||||
" if res.metrics:\n",
|
||||
" print(f\" Depth: {res.metrics.get('hierarchy_depth')}, Concepts: {res.metrics.get('class_count')}\")\n",
|
||||
"\n",
|
||||
"print_report(\"Classical NLP\", nlp_ontology)\n",
|
||||
"print_report(\"Generative AI\", llm_ontology)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"---\n",
|
||||
"\n",
|
||||
"## Export to OWL\n",
|
||||
"\n",
|
||||
"Finally, we choose the best model (or merge them using `ReuseManager`, covered in other guides) and export it."
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"from semantica.export import OWLExporter\n",
|
||||
"\n",
|
||||
"exporter = OWLExporter()\n",
|
||||
"\n",
|
||||
"# Export the NLP ontology by default, or the LLM one if preferred\n",
|
||||
"target_ontology = llm_ontology if llm_ontology else nlp_ontology\n",
|
||||
"\n",
|
||||
"output_file = \"quantum_ontology.ttl\"\n",
|
||||
"exporter.export(target_ontology, output_file, format=\"turtle\")\n",
|
||||
"print(f\"Successfully exported ontology to {output_file}\")"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Summary\n",
|
||||
"\n",
|
||||
"You have learned to:\n",
|
||||
"1. **Extract Ontologies Programmatically**: Using `NERExtractor` for reliable, data-driven modeling.\n",
|
||||
"2. **Generate Ontologies with AI**: Using `LLMOntologyGenerator` for conceptual, high-level modeling.\n",
|
||||
"3. **Visualize and Compare**: Using `OntologyVisualizer` to inspect the structural differences.\n",
|
||||
"4. **Validate and Export**: Ensuring quality before saving to OWL standards."
|
||||
]
|
||||
}
|
||||
],
|
||||
"metadata": {
|
||||
"kernelspec": {
|
||||
"display_name": "Python 3",
|
||||
"language": "python",
|
||||
"name": "python3"
|
||||
},
|
||||
"language_info": {
|
||||
"codemirror_mode": {
|
||||
"name": "ipython",
|
||||
"version": 3
|
||||
},
|
||||
"file_extension": ".py",
|
||||
"mimetype": "text/x-python",
|
||||
"name": "python",
|
||||
"nbconvert_exporter": "python",
|
||||
"pygments_lexer": "ipython3",
|
||||
"version": "3.8.10"
|
||||
}
|
||||
},
|
||||
"nbformat": 4,
|
||||
"nbformat_minor": 5
|
||||
}
|
||||
Reference in New Issue
Block a user