12 Commits
Author SHA1 Message Date
Sakshi Jain 5a3bdc393d fix(explorer): address review feedback on markdown viewer 2026-08-19 09:58:17 +05:30
Sakshi Jain 0f308b2078 feat(explorer): add markdown content preview and source view 2026-08-18 12:04:53 +05:30
Lakshay Saini 115e7965cd fix(explorer): gate temporal requests on graph load (#1003)
Explorer was firing temporal requests before the graph even loaded.

When the backend is down, /api/graph/nodes fails but the temporal
bounds and snapshot effects didn't care , they fired anyway, off in
their own corner, ignoring whether the graph actually came up. Every
page load with no backend meant three failed requests instead of one,
and a scrubber that had nothing to scrub.

Added two small predicate functions and gated the temporal effects on
them. Basically: don't ask for time-based data until you know the
graph itself loaded. An empty graph still counts as loaded, so that
case isn't broken.

Confirmed with the backend down, before and after: three failing
requests down to one.

Fixes #982.
2026-08-15 17:47:35 +05:00
Sameer6305 80de3652cf fixed qodo findings
Two issues addressed:

1. Plugin-loading useEffect unnecessarily depended on temporalState.
   After the #830 fix, no shouldLoad predicate reads temporalState, but
   the effect's dep array still included it, causing extra re-runs on
   every scrubber update. Removed temporalState from the dep array and
   the shouldLoad call site. Made temporalState optional in the
   LazyPluginRegistryEntry shouldLoad context type to match.

2. Regression test imported a local copy of shouldLoad instead of the
   production predicate. Extracted all three shouldLoad predicates into
   pluginRegistryPredicates.ts (pure module, no React/DOM dependencies),
   wired GraphWorkspace.tsx to use the imported functions, and updated
   the test to import and exercise the real production code via tsx.
   Verified: introducing the old broken condition causes the test to fail;
   the correct implementation passes all 7 assertions.
2026-08-05 17:37:33 +05:30
Sameer6305 8d52281cdf chore(explorer): clean up #830 branch — remove #793 file, add regression test
temporalDiffState.ts belongs to feat/793-temporal-diff-ui and should not
appear in the #830 diff. Remove it from this branch's tracked files.

Add the pluginRegistry.temporal.test.mjs regression test that covers the
shouldLoad fix committed in the main #830 commit (it was never committed).

Add test:plugin-registry script to package.json so the regression test
can be run via npm run test:plugin-registry.
2026-08-05 16:26:24 +05:30
dependabot[bot]anddependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 47c7f4adbe chore(deps): bump brace-expansion and eslint in /explorer (#797)
Bumps [brace-expansion](https://github.com/juliangruber/brace-expansion) to 5.0.8 and updates ancestor dependency [eslint](https://github.com/eslint/eslint). These dependencies need to be updated together.


Updates `brace-expansion` from 5.0.6 to 5.0.8
- [Release notes](https://github.com/juliangruber/brace-expansion/releases)
- [Commits](https://github.com/juliangruber/brace-expansion/compare/v5.0.6...v5.0.8)

Updates `eslint` from 9.39.4 to 10.8.0
- [Release notes](https://github.com/eslint/eslint/releases)
- [Commits](https://github.com/eslint/eslint/compare/v9.39.4...v10.8.0)

---
updated-dependencies:
- dependency-name: brace-expansion
  dependency-version: 5.0.8
  dependency-type: indirect
- dependency-name: eslint
  dependency-version: 10.8.0
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-07-25 16:31:43 +05:30
dependabot[bot]anddependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 9c58b9df7c chore(deps-dev): bump @babel/core from 7.29.0 to 7.29.6 in /explorer (#640)
Bumps [@babel/core](https://github.com/babel/babel/tree/HEAD/packages/babel-core) from 7.29.0 to 7.29.6.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v7.29.6/packages/babel-core)

---
updated-dependencies:
- dependency-name: "@babel/core"
  dependency-version: 7.29.6
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-06-16 19:58:37 +05:30
Mohd Kaif 6d9a690bcd security: force esbuild ^0.28.1; remove leaked Groq API keys from notebooks (#619)
- Add esbuild ^0.28.1 npm override in explorer/package.json (Dependabot #15,
  GHSA-gv7w-rqvm-qjhr); npm audit now reports 0 vulnerabilities
- Strip hardcoded GROQ_API_KEY values from 6 cookbook notebooks; fallback
  replaced with empty string (secret scanning alerts #1-#6)
  Affected: supply_chain/01, intelligence/01, cybersecurity/01 & 02,
  finance/01, blockchain/02
- CHANGELOG: document both fixes under [Unreleased] ### Security
2026-06-13 13:04:49 +05:30
Mohd Kaif c8519470bc security: fix 9 Dependabot/CodeQL alerts (DOMPurify, vite, uuid, workflow permissions) (#617)
* security: fix 9 Dependabot/CodeQL alerts — DOMPurify, vite, uuid, workflow permissions

- Add explicit permissions block to defender-for-devops.yml (CodeQL #25)
- Upgrade vite 5.4.x → 6.4.3; bundled esbuild 0.21.5 → 0.25.12 (Dependabot #2, #7)
- Force dompurify ^3.4.0 via npm overrides; resolves 6 DOMPurify XSS alerts (#4–#6, #8–#11)
- Force uuid ^13.0.1 via npm overrides; fixes buffer bounds check (Dependabot #12)

* fix(ci): exclude bandit from MSDO scan on windows-latest

bandit_runner.exe builds a per-file command line; on a large Python repo
the total command string exceeds the Windows CreateProcess limit and the
process fails to start (Win32 ERROR_FILENAME_EXCED_RANGE 206).
Exclude bandit via the tools param and retain checkov, eslint,
templateanalyzer, terrascan, and binskim.

* fix(ci): drop binskim (no binaries), enable Neptune audit logging

- Remove binskim from MSDO tools: repo has no compiled binaries so
  BinSkim raises AnalyzeArgumentNoValuesException and breaks the run
- Add EnableCloudwatchLogsExports: [audit] to NeptuneCluster to fix
  Checkov CKV_AWS_101 (the one error-level result breaking the build)
2026-06-13 12:40:15 +05:30
KaifAhmad1 2811469071 feat(explorer): add Ontology Hub workspace — Registry, Loader, Entity Search & SKOS (closes #518)
Implements the first subissue of Ontology Hub (#517):

Frontend:
- New OntologyWorkspace with 6 tabs (Registry, Editor, Versions,
  Alignments, Health, SHACL); active tab persisted in ontologyTab URL param
- OntologyManager: full registry CRUD with status/format badges, stats,
  toggle/refresh/remove actions, search + filter toolbar, empty state CTA
- OntologyLoader: 3-tab modal — URL import with live preview, drag-and-drop
  file upload, and Create New (from scratch / data / text)
- OntologySearch: debounced entity search with type filters and detail panel
  showing superclasses, subclasses, domain/range, instance count
- SKOSVocabularyManager: recursive concept hierarchy tree, client-side
  filtering, full SKOS annotation + relation detail panel
- Editor/Versions (subissue 2) and Alignments/Health/SHACL (subissue 3)
  tabs render descriptive stub cards as placeholders

Backend:
- 12 new FastAPI endpoints under /api/ontology (registry, preview, load,
  create, search, entity detail, SKOS schemes + concept detail, toggle,
  refresh, remove)
- rdflib-based RDF parser supporting Turtle, RDF/XML, N-Triples, JSON-LD
- URL fetching via requests in asyncio.to_thread with 20 MB cap
- Registry stored in app.state.ontology_registry; route ordering prevents
  literal paths being shadowed by /{uri:path} wildcards

Also: add playwright dev dependency for screenshot testing
2026-05-01 13:08:45 +05:30
KaifAhmad1andZohaib Hassnain 39aaae778f Merge origin/main into feat/graph-declutter-and-calm
Co-authored-by: KaifAhmad1 <kaifahmad087@gmail.com>

Co-authored-by: Zohaib Hassnain <109234410+ZohaibHassan16@users.noreply.github.com>
2026-04-20 17:20:47 +05:30
KaifAhmad1andClaude Sonnet 4.6 3ea1283626 feat(explorer): add Semantica Knowledge Explorer UI with full feature set
## Folder & Project
- Renamed `semantica-explorer/` → `explorer/` (cleaner path)
- Browser tab title: `Semantica Knowledge Explorer`
- Brand pill: `SEM` → `SKE` (tooltip: Semantica Knowledge Explorer)
- Nav rail label: `Explore` → `Knowledge Explorer`
- package.json name: `semantica-knowledge-explorer`
- Downgraded Vite 8 → Vite 5 for Node v20.17.0 compatibility

## App Shell
- Dynamic per-workspace kicker labels replacing static "Workspace" pill:
  Graph Studio · Vocabulary Browser · Reasoning Engine · SPARQL Query ·
  Decision Intelligence · Knowledge Audit · Graph Governance

## Enrich Workspace — 2 new tabs
### Entity Resolution tab
- Similarity threshold slider (0.50–0.99)
- Run Dedup Scan → POST /api/enrich/dedup
- Flagged pairs list with colour-coded score bars (red/amber/green)
- Expandable inline diff: primary vs duplicate side-by-side
- One-click Merge → POST /api/enrich/merge with logEvent dispatch
- Dismiss per pair; Clear all button
- Merge history sidebar pulled live from Registry store

### Registry tab (Document Registry)
- Live chronological audit log of all KG mutations in-session
- Colour-coded op-type badges: IMPORT · MERGE · ADD NODE · ADD EDGE ·
  INFER · DELETE · EXPORT · VOCAB
- Filter pills to narrow by operation type
- Expandable JSON detail rows per entry
- Clear log button
- Entirely client-side via registryStore (no backend needed)

## Manage Workspace — 2 new tabs
### KG Overview tab
- Stats chips: total nodes, edges, graph density
- Node type breakdown bar chart (up to 8 types, colour-coded)
- Edge type breakdown bar chart from /api/graph/stats
- Top-10 most connected nodes ranked by degree
- Skeleton loading states + Refresh button

### Ontology Summary tab
- Read-only SKOS scheme tree (scheme → top concepts → narrower)
- Concept detail panel: labels, notation, description, narrower nav
- "Open Full Browser" button deep-links to Vocabulary Browser tab

## Decision Workspace polish
- CausalFlowDiagram: vertical node cards connected by relationship pills
- Outcome badges: colour-coded (green=approved, red=rejected, amber=deferred)
- Live filter input across decision ID, category, and outcome
- Animated skeleton loading while list fetches

## Graph Inspector polish
- PathFlowViz: clickable node chips connected by edge-type labels;
  clicking a chip focuses that node in the canvas
- Link Prediction button shows spinner while computing
- Empty states for path trace and candidate links sections

## Registry dispatch — WebSocket
- ADD_NODE events → logEvent("add-node", …) in GraphWorkspace WS handler
- ADD_EDGE events → logEvent("add-edge", …) in GraphWorkspace WS handler
- Import, Export, Merge already dispatched logEvent on API response

## Graph visibility overhaul
### Edge colours (were nearly transparent, now clearly visible)
- edgeBackbone:    rgba(…, 0.04)  → rgba(…, 0.38)
- edgeStructure:   rgba(…, 0.009) → rgba(…, 0.28)
- edgeInspection:  rgba(…, 0.026) → rgba(…, 0.48)
- Muted edges:     0.009–0.02    → 0.12–0.26
- Focus edges:     0.16          → 0.42

### Edge sizes
- default minSize: 0.18 → 0.9 (always at least 1 pixel wide)
- path minSize:    1.8  → 2.4
- inactive/muted:  hide:true → hide:false (dimmed not hidden)

### Node sizes
- default sizeMultiplier: 0.72 → 0.92
- default minSize:        0.68 → 3.5 (visible at all zoom levels)
- overview nodeScale:     0.66 → 0.88
- nodeTintMix (colour):   0.03 → 0.14
- nodeCoreMix (brightness): 0.52 → 0.72

### Label budget
- overview:   10  → 28 labels
- structure:  36  → 60 labels
- inspection: 80  → 120 labels

### Sigma settings
- renderEdgeLabels:        false → true  (relationship type on every edge)
- edgeLabelSize:           —    → 10
- labelRenderedSizeThreshold: 4 → 2
- labelDensity:            0.86 → 1.1
- hideLabelsOnMove:        true → false (labels stay visible while panning)
- hideEdgesOnMove:         true → false (edges stay visible while panning)
- minCameraRatio:          —    → 0.04 (prevents zooming inside a node)
- maxCameraRatio:          —    → 8    (graph stays visible when zoomed out)

### Zoom controls
- Added Zoom In (+) and Zoom Out (−) buttons to graph toolbar
- Smooth animated zoom via camera.animatedZoom / animatedUnzoom (200ms)
- Mouse scroll wheel clamped between minCameraRatio and maxCameraRatio

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-13 13:40:40 +05:30