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6 Commits
Author SHA1 Message Date
dependabot[bot]anddependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 9c58b9df7c chore(deps-dev): bump @babel/core from 7.29.0 to 7.29.6 in /explorer (#640) 
Bumps [@babel/core](https://github.com/babel/babel/tree/HEAD/packages/babel-core) from 7.29.0 to 7.29.6.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v7.29.6/packages/babel-core)

---
updated-dependencies:
- dependency-name: "@babel/core"
  dependency-version: 7.29.6
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2026-06-16 19:58:37 +05:30
Mohd Kaif 6d9a690bcd security: force esbuild ^0.28.1; remove leaked Groq API keys from notebooks (#619) 
- Add esbuild ^0.28.1 npm override in explorer/package.json (Dependabot #15,
  GHSA-gv7w-rqvm-qjhr); npm audit now reports 0 vulnerabilities
- Strip hardcoded GROQ_API_KEY values from 6 cookbook notebooks; fallback
  replaced with empty string (secret scanning alerts #1-#6)
  Affected: supply_chain/01, intelligence/01, cybersecurity/01 & 02,
  finance/01, blockchain/02
- CHANGELOG: document both fixes under [Unreleased] ### Security
 2026-06-13 13:04:49 +05:30
Mohd Kaif c8519470bc security: fix 9 Dependabot/CodeQL alerts (DOMPurify, vite, uuid, workflow permissions) (#617) 
* security: fix 9 Dependabot/CodeQL alerts — DOMPurify, vite, uuid, workflow permissions

- Add explicit permissions block to defender-for-devops.yml (CodeQL #25)
- Upgrade vite 5.4.x → 6.4.3; bundled esbuild 0.21.5 → 0.25.12 (Dependabot #2, #7)
- Force dompurify ^3.4.0 via npm overrides; resolves 6 DOMPurify XSS alerts (#4–#6, #8–#11)
- Force uuid ^13.0.1 via npm overrides; fixes buffer bounds check (Dependabot #12)

* fix(ci): exclude bandit from MSDO scan on windows-latest

bandit_runner.exe builds a per-file command line; on a large Python repo
the total command string exceeds the Windows CreateProcess limit and the
process fails to start (Win32 ERROR_FILENAME_EXCED_RANGE 206).
Exclude bandit via the tools param and retain checkov, eslint,
templateanalyzer, terrascan, and binskim.

* fix(ci): drop binskim (no binaries), enable Neptune audit logging

- Remove binskim from MSDO tools: repo has no compiled binaries so
  BinSkim raises AnalyzeArgumentNoValuesException and breaks the run
- Add EnableCloudwatchLogsExports: [audit] to NeptuneCluster to fix
  Checkov CKV_AWS_101 (the one error-level result breaking the build)
 2026-06-13 12:40:15 +05:30
KaifAhmad1 2811469071 feat(explorer): add Ontology Hub workspace — Registry, Loader, Entity Search & SKOS (closes #518) 
Implements the first subissue of Ontology Hub (#517):

Frontend:
- New OntologyWorkspace with 6 tabs (Registry, Editor, Versions,
  Alignments, Health, SHACL); active tab persisted in ontologyTab URL param
- OntologyManager: full registry CRUD with status/format badges, stats,
  toggle/refresh/remove actions, search + filter toolbar, empty state CTA
- OntologyLoader: 3-tab modal — URL import with live preview, drag-and-drop
  file upload, and Create New (from scratch / data / text)
- OntologySearch: debounced entity search with type filters and detail panel
  showing superclasses, subclasses, domain/range, instance count
- SKOSVocabularyManager: recursive concept hierarchy tree, client-side
  filtering, full SKOS annotation + relation detail panel
- Editor/Versions (subissue 2) and Alignments/Health/SHACL (subissue 3)
  tabs render descriptive stub cards as placeholders

Backend:
- 12 new FastAPI endpoints under /api/ontology (registry, preview, load,
  create, search, entity detail, SKOS schemes + concept detail, toggle,
  refresh, remove)
- rdflib-based RDF parser supporting Turtle, RDF/XML, N-Triples, JSON-LD
- URL fetching via requests in asyncio.to_thread with 20 MB cap
- Registry stored in app.state.ontology_registry; route ordering prevents
  literal paths being shadowed by /{uri:path} wildcards

Also: add playwright dev dependency for screenshot testing
 2026-05-01 13:08:45 +05:30
KaifAhmad1andZohaib Hassnain 39aaae778f Merge origin/main into feat/graph-declutter-and-calm 
Co-authored-by: KaifAhmad1 <kaifahmad087@gmail.com>

Co-authored-by: Zohaib Hassnain <109234410+ZohaibHassan16@users.noreply.github.com>
 2026-04-20 17:20:47 +05:30
KaifAhmad1andClaude Sonnet 4.6 3ea1283626 feat(explorer): add Semantica Knowledge Explorer UI with full feature set 
## Folder & Project
- Renamed `semantica-explorer/` → `explorer/` (cleaner path)
- Browser tab title: `Semantica Knowledge Explorer`
- Brand pill: `SEM` → `SKE` (tooltip: Semantica Knowledge Explorer)
- Nav rail label: `Explore` → `Knowledge Explorer`
- package.json name: `semantica-knowledge-explorer`
- Downgraded Vite 8 → Vite 5 for Node v20.17.0 compatibility

## App Shell
- Dynamic per-workspace kicker labels replacing static "Workspace" pill:
  Graph Studio · Vocabulary Browser · Reasoning Engine · SPARQL Query ·
  Decision Intelligence · Knowledge Audit · Graph Governance

## Enrich Workspace — 2 new tabs
### Entity Resolution tab
- Similarity threshold slider (0.50–0.99)
- Run Dedup Scan → POST /api/enrich/dedup
- Flagged pairs list with colour-coded score bars (red/amber/green)
- Expandable inline diff: primary vs duplicate side-by-side
- One-click Merge → POST /api/enrich/merge with logEvent dispatch
- Dismiss per pair; Clear all button
- Merge history sidebar pulled live from Registry store

### Registry tab (Document Registry)
- Live chronological audit log of all KG mutations in-session
- Colour-coded op-type badges: IMPORT · MERGE · ADD NODE · ADD EDGE ·
  INFER · DELETE · EXPORT · VOCAB
- Filter pills to narrow by operation type
- Expandable JSON detail rows per entry
- Clear log button
- Entirely client-side via registryStore (no backend needed)

## Manage Workspace — 2 new tabs
### KG Overview tab
- Stats chips: total nodes, edges, graph density
- Node type breakdown bar chart (up to 8 types, colour-coded)
- Edge type breakdown bar chart from /api/graph/stats
- Top-10 most connected nodes ranked by degree
- Skeleton loading states + Refresh button

### Ontology Summary tab
- Read-only SKOS scheme tree (scheme → top concepts → narrower)
- Concept detail panel: labels, notation, description, narrower nav
- "Open Full Browser" button deep-links to Vocabulary Browser tab

## Decision Workspace polish
- CausalFlowDiagram: vertical node cards connected by relationship pills
- Outcome badges: colour-coded (green=approved, red=rejected, amber=deferred)
- Live filter input across decision ID, category, and outcome
- Animated skeleton loading while list fetches

## Graph Inspector polish
- PathFlowViz: clickable node chips connected by edge-type labels;
  clicking a chip focuses that node in the canvas
- Link Prediction button shows spinner while computing
- Empty states for path trace and candidate links sections

## Registry dispatch — WebSocket
- ADD_NODE events → logEvent("add-node", …) in GraphWorkspace WS handler
- ADD_EDGE events → logEvent("add-edge", …) in GraphWorkspace WS handler
- Import, Export, Merge already dispatched logEvent on API response

## Graph visibility overhaul
### Edge colours (were nearly transparent, now clearly visible)
- edgeBackbone:    rgba(…, 0.04)  → rgba(…, 0.38)
- edgeStructure:   rgba(…, 0.009) → rgba(…, 0.28)
- edgeInspection:  rgba(…, 0.026) → rgba(…, 0.48)
- Muted edges:     0.009–0.02    → 0.12–0.26
- Focus edges:     0.16          → 0.42

### Edge sizes
- default minSize: 0.18 → 0.9 (always at least 1 pixel wide)
- path minSize:    1.8  → 2.4
- inactive/muted:  hide:true → hide:false (dimmed not hidden)

### Node sizes
- default sizeMultiplier: 0.72 → 0.92
- default minSize:        0.68 → 3.5 (visible at all zoom levels)
- overview nodeScale:     0.66 → 0.88
- nodeTintMix (colour):   0.03 → 0.14
- nodeCoreMix (brightness): 0.52 → 0.72

### Label budget
- overview:   10  → 28 labels
- structure:  36  → 60 labels
- inspection: 80  → 120 labels

### Sigma settings
- renderEdgeLabels:        false → true  (relationship type on every edge)
- edgeLabelSize:           —    → 10
- labelRenderedSizeThreshold: 4 → 2
- labelDensity:            0.86 → 1.1
- hideLabelsOnMove:        true → false (labels stay visible while panning)
- hideEdgesOnMove:         true → false (edges stay visible while panning)
- minCameraRatio:          —    → 0.04 (prevents zooming inside a node)
- maxCameraRatio:          —    → 8    (graph stays visible when zoomed out)

### Zoom controls
- Added Zoom In (+) and Zoom Out (−) buttons to graph toolbar
- Smooth animated zoom via camera.animatedZoom / animatedUnzoom (200ms)
- Mouse scroll wheel clamped between minCameraRatio and maxCameraRatio

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-13 13:40:40 +05:30