--- title: "Visualization Module" description: "Interactive and static knowledge graph, ontology, embedding, and temporal visualization." icon: "chart-bar" --- `semantica.visualization` renders knowledge graphs, ontologies, embedding spaces, and temporal data as interactive HTML or static images — without launching the full Explorer server. ## What You Get Interactive HTML (PyVis) and static image (Matplotlib) graph rendering with layout options. Class hierarchy and property relationship visualization from any OntologyManager. UMAP, t-SNE, and PCA dimensionality reduction plots for embedding cluster analysis. Timeline views, animated evolution, snapshot comparison, and temporal pattern highlights. Ego-mode neighborhood views and N×N distance matrix heatmaps from Distance Intelligence. Centrality rankings, community-colored graphs, and degree distribution histograms. ## Quick Start ```python from semantica.visualization import GraphVisualizer viz = GraphVisualizer() # Interactive HTML — opens in browser, supports hover and click viz.visualize(graph, output="graph.html") ``` ```python viz.visualize( graph, output="graph.html", layout="force_directed", # "force_directed" | "hierarchical" | "circular" | "spring" node_color_by="type", # color nodes by entity type attribute edge_label="relation", # show edge relationship labels color_scheme="vibrant", # color palette — see Color Schemes section max_nodes=500, # limit rendering for large graphs ) ``` ```python # Static PNG — for reports and embedding in documents viz.visualize(graph, output="graph.png", dpi=150) # Vector SVG — for publications and scalable diagrams viz.visualize(graph, output="graph.svg") # PDF — for print or compliance reports viz.visualize(graph, output="graph.pdf") ``` ## Visualizers Interactive and static knowledge graph rendering: ```python from semantica.visualization import GraphVisualizer viz = GraphVisualizer() # Interactive HTML viz.visualize(graph, output="graph.html") # Static PNG with custom DPI viz.visualize(graph, output="graph.png", backend="matplotlib", dpi=150) # Display inline (Jupyter or default browser) viz.show(graph) ``` **Layout options:** | Layout | Description | Best For | | ------ | ----------- | -------- | | `force_directed` | Physics simulation — clusters emerge naturally | General graphs | | `hierarchical` | Top-down tree layout | Taxonomies, org charts | | `circular` | Nodes on a circle, edges as chords | Small dense graphs | | `spring` | Spring-force layout (Fruchterman-Reingold) | Medium graphs | Visualize class hierarchies and property relationships: ```python from semantica.visualization import OntologyVisualizer viz = OntologyVisualizer() # Full ontology graph — classes, properties, and constraints viz.visualize(ontology, output="ontology.html") # Class hierarchy only — cleaner for large ontologies viz.visualize_hierarchy(ontology, output="hierarchy.html") ``` Project high-dimensional embeddings into 2D for cluster analysis: ```python from semantica.visualization import EmbeddingVisualizer viz = EmbeddingVisualizer() viz.visualize( embeddings=embeddings, labels=labels, output="embeddings.html", method="umap", # "umap" | "tsne" | "pca" ) ``` | Method | Speed | Preserves | Best For | | ------ | ----- | --------- | -------- | | `umap` | Fast | Global + local structure | Large datasets, cluster discovery | | `tsne` | Medium | Local structure | Tight cluster separation | | `pca` | Very fast | Variance | Quick overview, linear structure | Visualize how a knowledge graph changes over time: ```python from semantica.visualization import TemporalVisualizer from datetime import datetime viz = TemporalVisualizer() # Static timeline of additions and removals viz.visualize_timeline(temporal_kg, output="timeline.html") # Animated evolution — one frame per time step viz.animate(temporal_kg, output="evolution.html", fps=2) # Side-by-side snapshot comparison snap_a = temporal_kg.at(datetime(2020, 1, 1)) snap_b = temporal_kg.at(datetime(2023, 1, 1)) viz.compare_snapshots(snap_a, snap_b, output="snapshot_diff.html") # Pattern visualization — highlight recurring temporal patterns viz.visualize_patterns(temporal_kg, pattern_type="recurrence", output="patterns.html") ``` Semantic neighborhood and distance matrix visualization from Distance Intelligence: ```python from semantica.visualization import DistanceVisualizer viz = DistanceVisualizer() # Ego-mode: neighborhood of one node colored by distance band viz.visualize_ego( graph, center_node="Apple Inc.", output="ego.html", radius=0.5, # semantic distance radius ) # N×N distance matrix heatmap viz.visualize_distance_matrix( matrix=distance_matrix, labels=node_labels, output="distance_heatmap.html", ) ``` Visualize graph analytics results — centrality, communities, and degree distribution: ```python from semantica.visualization import AnalyticsVisualizer from semantica.kg import CentralityCalculator, CommunityDetector calc = CentralityCalculator() centrality = calc.calculate_all_centrality(kg) detector = CommunityDetector() communities = detector.detect_communities(kg, algorithm="louvain") viz = AnalyticsVisualizer() # Bar chart of top-N nodes by centrality measure viz.visualize_centrality(centrality, metric="pagerank", top_k=20, output="centrality.html") # Community-colored graph viz.visualize_communities(kg, communities, output="communities.html") # Degree distribution histogram viz.visualize_degree_distribution(kg, output="degree_dist.html") # Combined analytics dashboard viz.visualize_analytics_dashboard( kg, centrality=centrality, communities=communities, output="analytics_dashboard.html", ) ``` ## Color Schemes All visualizers accept a `color_scheme` parameter: ```python viz.visualize(graph, output="graph.html", color_scheme="vibrant") ``` | Scheme | Description | Best For | | ------ | ----------- | -------- | | `default` | Blue-grey palette | General use | | `vibrant` | High-contrast, saturated colours | Presentations | | `pastel` | Soft, muted tones | Light backgrounds | | `dark` | Dark background with bright nodes | Dark-mode dashboards | | `light` | White background, thin edges | Publications, print | | `colorblind` | Okabe-Ito safe palette | Accessibility | ## Export Formats | Format | Interactive | Scalable | Best For | | ------ | ----------- | -------- | -------- | | `.html` | Yes | N/A | Web dashboards, exploratory analysis | | `.png` | No | No | Reports, Jupyter notebooks | | `.svg` | No | Yes | Publications, slide decks | | `.pdf` | No | Yes | Print, compliance exports | ## Graph Explorer (Full Dashboard) For a full browser-based UI with search, path finding, and the Ontology Hub, use `semantica.explorer`: ```python from semantica.explorer import start_explorer start_explorer(graph=kg, port=8080) # Opens at http://localhost:8080 ``` See the [Explorer reference](explorer) for the full feature set and REST API. ## Tips and Common Pitfalls **Use `max_nodes=500` for large graphs.** Force-directed layouts become unreadable and very slow above ~1,000 nodes. Limit with `max_nodes=500` or filter to a subgraph (e.g., top 100 nodes by PageRank) before visualizing. **HTML output is always the best starting point.** Interactive HTML lets you zoom, pan, hover for details, and hide node types — giving you orders of magnitude more exploratory power than a static PNG. Only export to PNG/SVG/PDF when embedding in a report. **Use `color_scheme="colorblind"` in publications and dashboards.** The Okabe-Ito palette is readable for everyone, including the ~8% of male readers who are red-green colorblind. Reserve `vibrant` for internal presentations only. **UMAP is faster than t-SNE at scale.** For embedding spaces with >5,000 points, UMAP completes in seconds; t-SNE may take minutes. Both produce good cluster separation — use UMAP for exploratory speed, t-SNE for final publication-quality plots. **`TemporalVisualizer.animate()` can produce large files.** Animated HTML files include all frames and can reach dozens of MB for long time series. Use `fps=1` or reduce the number of time steps for a manageable file size. **For interactive dashboards, prefer Explorer.** `GraphVisualizer.visualize()` generates a self-contained HTML file. `start_explorer()` gives a full live web app with search, filtering, path-finding, and REST API. Use Explorer for team exploration, Visualizer for standalone report embeds. The graph being visualized. Visualize ontology class structure. Generate the embeddings visualized here. Full interactive Knowledge Explorer UI.