mirror of
https://github.com/semantica-agi/semantica.git
synced 2026-09-05 04:00:31 +00:00
Wei Tao
dd1e654047
The Ontology Hub editor selected a registered ontology but left the canvas empty, and opening an ontology deep link landed on the Welcome workspace instead of the editor. Two independent causes: the application shell ignored `ontologyTab`/`ontologyEntity` URL state at startup, and the editor loaded registry metadata but never fetched the selected ontology's schema nodes and structural edges. The backend now exposes a bounded schema subgraph for one ontology at `GET /api/ontology/graph?uri=...`, and the editor maps that response into React Flow nodes and edges with loading, error, selection, and layout handling. Five things came out of review on the new endpoint and the editor that consumes it. The edge selection originally included an edge whenever either its source or its target was a core node. That let a property owned by a completely unrelated ontology leak into the requested one just because its `rdfs:domain` or `rdfs:range` happened to point at one of the requested ontology's classes. Edges are now selected only when their source is a core node, so the requested ontology can still reference outward to external vocabulary, but nothing from an unrelated ontology gets pulled in the other direction. The backend accepts both compact and full-IRI forms for node types (`owl:Class` and `http://www.w3.org/2002/07/owl#Class` are equivalent), but the frontend classifier only recognized the compact strings, so a full-IRI class or ontology node fell through to `"external"`, wrong panel, wrongly read-only. Classification moved into `ontologyEditorModel.ts` as `classifyNodeType`, which compacts known full IRIs before matching. An ontology imported through the fallback RDF parser, one with no `owl:Ontology` or `skos:ConceptScheme` declaration, minted a synthetic registry URI but never created a matching graph node or set `scheme_uri` on the classes and properties it imported. `_node_belongs_to_ontology` had nothing to associate those nodes with, so `core_node_ids` ended up empty and the endpoint 404'd for a registered ontology that genuinely had data. The fallback parser now records that ownership and emits a matching `owl:Ontology` node whenever it has to synthesize a URI. Nested namespaces that were never registered as their own ontology got silently absorbed into whichever parent prefix matched, in both directions: a fragment-delimited nested name (`<stem>/child#Term`) and a path-delimited one (`<stem>/child/Term`). The first fix only handled the fragment form; prefix ownership now only extends to names minted directly in the ontology's own namespace (`<stem>#Term` or `<stem>/Term`), and any further delimiter of either kind marks a nested vocabulary that isn't absorbed until it's registered or carries an explicit owner. Once registered, the nested namespace owns its own nodes as before. Selecting a node in the editor writes `ontologyEntity=<id>` into the URL. Switching ontologies via the dropdown cleared the in-memory selection but left that parameter pointing at the old ontology, so a reload after switching could resolve the stale ID and jump back. The dropdown now clears the parameter on change. Regression tests cover each fix directly: inward-edge exclusion, the full-IRI classification matrix, an end-to-end fallback-import test that forces the parser path and opens the resulting ontology, and a nested-namespace ownership matrix covering both delimiter forms in both the registered and unregistered case.
63 lines
2.1 KiB
JSON
63 lines
2.1 KiB
JSON
{
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"name": "semantica-knowledge-explorer",
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"private": true,
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"version": "0.0.0",
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"type": "module",
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"scripts": {
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"dev": "vite",
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"build": "tsc -b && vite build",
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"lint": "eslint .",
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"preview": "vite preview",
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"test:graph-store": "node --test tests/graphStore.multi-edge.test.mjs",
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"test:graph-workspace": "node --import tsx --test tests/markdownContentViewer.test.ts tests/graphSceneState.display.test.ts tests/temporalLifecycle.test.ts tests/deterministicExplorerRendering.test.ts tests/smallGraphLayout.test.ts tests/realtimeGraphAttributes.test.ts tests/ontologyEditorModel.test.ts",
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"test:deterministic-e2e": "node --import tsx --test tests/deterministicExplorerRendering.e2e.ts",
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"test:plugin-registry": "node --import tsx --test tests/pluginRegistry.temporal.test.mjs"
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},
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"dependencies": {
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"@monaco-editor/react": "^4.7.0",
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"@sigma/edge-curve": "^3.1.0",
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"@sigma/node-border": "^3.0.0",
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"@tanstack/react-query": "^5.95.2",
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"@xyflow/react": "^12.10.2",
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"graphology": "^0.26.0",
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"graphology-communities-louvain": "^2.0.2",
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"graphology-layout-forceatlas2": "^0.10.1",
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"graphology-metrics": "^2.4.0",
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"graphology-shortest-path": "^2.1.0",
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"lucide-react": "^1.7.0",
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"playwright": "^1.59.1",
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"react": "^19.2.4",
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"react-arborist": "^3.4.3",
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"react-dom": "^19.2.4",
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"react-dropzone": "^15.0.0",
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"react-markdown": "^10.1.0",
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"remark-gfm": "^4.0.1",
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"sigma": "^3.0.2",
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"vis-data": "^8.0.3",
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"vis-timeline": "^8.5.0"
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},
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"devDependencies": {
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"@babel/core": "^7.29.6",
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"@eslint/js": "^9.39.4",
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"@types/babel__core": "^7.20.5",
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"@types/node": "^24.12.0",
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"@types/react": "^19.2.14",
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"@types/react-dom": "^19.2.3",
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"@vitejs/plugin-react": "^4.3.0",
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"babel-plugin-react-compiler": "^1.0.0",
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"eslint": "^10.8.0",
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"eslint-plugin-react-hooks": "^7.0.1",
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"eslint-plugin-react-refresh": "^0.5.2",
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"globals": "^17.4.0",
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"tsx": "^4.21.0",
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"typescript": "~5.9.3",
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"typescript-eslint": "^8.57.0",
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"vite": "^6.4.2"
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},
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"overrides": {
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"dompurify": "^3.4.0",
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"uuid": "^13.0.1",
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"esbuild": "^0.28.1"
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}
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}
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