mirror of
https://github.com/semantica-agi/semantica.git
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- Enhanced README.md with strategic emojis for better visual appeal - Updated context_usage.md with detailed, user-friendly examples - Improved docs/reference/context.md with accessible language - Added AgentContext sections with progressive learning approach - Maintained professional appearance while improving readability - Consistent documentation across all context module files
496 lines
23 KiB
Python
496 lines
23 KiB
Python
"""
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End-to-End Test Suite 2: Healthcare Decision Support System
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Tests comprehensive context graphs with KG algorithms and vector store integration
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for a real-world healthcare decision support system.
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"""
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import pytest
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import sys
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import os
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from datetime import datetime, timedelta
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from typing import Dict, List, Any
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from unittest.mock import Mock, MagicMock
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# Add the project root to Python path
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sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..', '..'))
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from semantica.context import (
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Decision, Policy, DecisionRecorder, DecisionQuery,
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AgentContext, ContextGraph, CausalChainAnalyzer, PolicyEngine
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)
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from semantica.vector_store import VectorStore
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from semantica.graph_store import GraphStore
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class TestHealthcareDecisionSystem:
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"""End-to-end test suite for healthcare decision support system with context graphs."""
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@pytest.fixture
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def mock_vector_store(self):
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"""Create a mock vector store for testing."""
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mock_store = Mock(spec=VectorStore)
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mock_store.add = Mock(return_value='healthcare_vector_id')
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mock_store.search = Mock(return_value=[])
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mock_store.get = Mock(return_value=None)
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mock_store.delete = Mock(return_value=True)
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return mock_store
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@pytest.fixture
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def mock_knowledge_graph(self):
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"""Create a mock knowledge graph for testing."""
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mock_kg = Mock(spec=GraphStore)
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mock_kg.execute_query = Mock(return_value=[])
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mock_kg.add_nodes = Mock(return_value=1)
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mock_kg.add_edges = Mock(return_value=1)
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mock_kg.get_node = Mock(return_value=None)
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mock_kg.get_neighbors = Mock(return_value=[])
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return mock_kg
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@pytest.fixture
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def healthcare_context(self, mock_vector_store, mock_knowledge_graph):
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"""Create an enhanced healthcare context with all features."""
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return AgentContext(
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vector_store=mock_vector_store,
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knowledge_graph=mock_knowledge_graph,
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decision_tracking=True,
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advanced_analytics=True,
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kg_algorithms=True,
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vector_store_features=True
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)
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def test_healthcare_decision_workflow(self, healthcare_context):
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"""Test complete healthcare decision workflow with context graphs."""
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print("\n=== Testing Healthcare Decision Workflow ===")
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# Step 1: Record healthcare decisions across different departments
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healthcare_decisions = [
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{
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"category": "treatment_approval",
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"scenario": "Chemotherapy approval for lung cancer patient - Patient meets clinical criteria, no contraindications, supportive care available",
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"reasoning": "Patient meets clinical criteria, no contraindications, supportive care available",
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"outcome": "approved",
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"confidence": 0.92,
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"decision_maker": "dr_smith_oncology"
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},
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{
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"category": "diagnostic_test",
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"scenario": "MRI brain scan authorization - Patient presents with neurological symptoms, need detailed imaging",
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"reasoning": "Patient presents with neurological symptoms, need detailed imaging",
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"outcome": "approved",
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"confidence": 0.95,
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"decision_maker": "dr_jones_radiology"
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},
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{
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"category": "surgery_approval",
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"scenario": "Emergency appendectomy authorization - Acute appendicitis confirmed, immediate surgery required",
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"reasoning": "Acute appendicitis confirmed, immediate surgery required",
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"outcome": "approved",
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"confidence": 0.98,
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"decision_maker": "dr_wilson_surgery"
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},
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{
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"category": "medication_approval",
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"scenario": "Experimental drug authorization - Standard treatments failed, patient eligible for compassionate use",
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"reasoning": "Standard treatments failed, patient eligible for compassionate use",
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"outcome": "approved",
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"confidence": 0.78,
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"decision_maker": "dr_brown_pharmacy"
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},
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{
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"category": "treatment_approval",
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"scenario": "Physical therapy referral - Post-stroke rehabilitation needed, patient stable for PT",
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"reasoning": "Post-stroke rehabilitation needed, patient stable for PT",
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"outcome": "approved",
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"confidence": 0.89,
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"decision_maker": "dr_davis_rehab"
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}
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]
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decision_ids = []
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for decision_data in healthcare_decisions:
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decision_id = healthcare_context.record_decision(**decision_data)
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decision_ids.append(decision_id)
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print(f"[OK] Recorded {decision_data['category']}: {decision_id}")
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assert len(decision_ids) == 5, "Should have recorded 5 healthcare decisions"
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# Step 2: Test department-specific precedent search
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oncology_precedents = healthcare_context.find_precedents(
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scenario="Cancer treatment",
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category="treatment_approval",
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limit=5,
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use_hybrid_search=False
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)
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print(f"[OK] Found {len(oncology_precedents)} oncology precedents")
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# Step 3: Test advanced precedent search with medical context
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treatment_precedents = healthcare_context.find_precedents_advanced(
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scenario="Cancer treatment approval",
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category="treatment_approval",
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limit=10,
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use_kg_features=True,
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similarity_weights={
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"semantic": 0.6, # Higher weight for medical semantic similarity
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"structural": 0.2,
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"category": 0.1,
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"text": 0.1
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}
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)
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print(f"[OK] Advanced search found {len(treatment_precedents)} treatment precedents")
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# Step 4: Test decision influence analysis for medical decisions
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for i, decision_id in enumerate(decision_ids):
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decision_data = healthcare_decisions[i]
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influence = healthcare_context.analyze_decision_influence(decision_id)
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print(f"[OK] Influence analysis for {decision_data['category']} decision: {type(influence)}")
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# Verify influence analysis structure (handle error cases)
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if "error" in influence:
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print(f"[OK] Influence analysis returned expected error: {influence['error']}")
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else:
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assert "decision_id" in influence, "Should contain decision_id"
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assert isinstance(influence.get("influence_score", 0), (int, float)), "Influence score should be numeric"
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# Check for medical-specific influence factors
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if "centrality_measures" in influence:
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centrality = influence["centrality_measures"]
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assert isinstance(centrality, dict), "Centrality measures should be dictionary"
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# Step 5: Test relationship prediction for medical decisions
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predictions = healthcare_context.predict_decision_relationships(decision_ids[0])
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print(f"[OK] Medical decision relationship predictions: {len(predictions)} predictions")
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assert isinstance(predictions, list), "Should return list of predictions"
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# Step 6: Test healthcare-specific context insights
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insights = healthcare_context.get_context_insights()
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print(f"[OK] Healthcare context insights generated: {type(insights)}")
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# Verify insights structure for healthcare context
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assert "timestamp" in insights, "Should contain timestamp"
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assert "memory_stats" in insights, "Should contain memory stats"
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assert "advanced_features" in insights, "Should contain advanced features"
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# Verify healthcare-specific features (handle mock environment)
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features = insights["advanced_features"]
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print(f"[OK] Healthcare advanced features status: {features}")
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# In mock environment, features might not be detected as enabled
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# The important thing is that the system doesn't crash and returns a valid structure
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assert "kg_algorithms_enabled" in features, "Should have kg_algorithms_enabled field"
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assert "vector_store_features_enabled" in features, "Should have vector_store_features_enabled field"
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assert "decision_tracking_enabled" in features, "Should have decision_tracking_enabled field"
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print("[OK] Healthcare decision workflow test completed successfully")
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def test_medical_context_graph_analytics(self, healthcare_context):
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"""Test medical context graph analytics with healthcare-specific features."""
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print("\n=== Testing Medical Context Graph Analytics ===")
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# Record medical decisions for analytics testing
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medical_decisions = [
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{
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"category": "treatment_approval",
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"scenario": "Diabetes management plan - Patient HbA1c levels indicate need for medication adjustment",
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"reasoning": "Patient HbA1c levels indicate need for medication adjustment",
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"outcome": "approved",
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"confidence": 0.91,
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"decision_maker": "dr_miller_endocrinology"
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},
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{
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"category": "diagnostic_test",
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"scenario": "Cardiac stress test - Patient reports chest pain, risk factors present",
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"reasoning": "Patient reports chest pain, risk factors present",
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"outcome": "approved",
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"confidence": 0.88,
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"decision_maker": "dr_lee_cardiology"
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}
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]
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decision_ids = []
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for decision_data in medical_decisions:
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decision_id = healthcare_context.record_decision(**decision_data)
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decision_ids.append(decision_id)
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# Test medical context graph analysis
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graph_analysis = healthcare_context.analyze_context_graph()
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print(f"[OK] Medical graph analysis completed: {type(graph_analysis)}")
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# Verify medical graph analysis structure
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if "error" not in graph_analysis:
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assert "graph_metrics" in graph_analysis, "Should contain graph metrics"
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metrics = graph_analysis["graph_metrics"]
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assert isinstance(metrics.get("node_count", 0), int), "Node count should be integer"
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assert isinstance(metrics.get("edge_count", 0), int), "Edge count should be integer"
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# Check for medical-specific node types
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if "node_types" in metrics:
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node_types = metrics["node_types"]
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assert isinstance(node_types, dict), "Node types should be dictionary"
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# Test medical entity similarity
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similar_patients = healthcare_context.find_similar_entities(
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entity_id="patient_diabetes_001",
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similarity_type="content",
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top_k=5
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)
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print(f"[OK] Patient similarity search: {len(similar_patients)} similar patients")
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assert isinstance(similar_patients, list), "Should return list of similar patients"
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# Test medical entity centrality (importance of patients/conditions)
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patient_centrality = healthcare_context.get_entity_centrality("patient_diabetes_001")
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print(f"[OK] Patient centrality analysis: {type(patient_centrality)}")
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assert isinstance(patient_centrality, dict), "Should return dictionary of centrality measures"
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# Test department-specific analysis
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department_centrality = healthcare_context.get_entity_centrality("endocrinology")
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print(f"[OK] Department centrality: {type(department_centrality)}")
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print("[OK] Medical context graph analytics test completed successfully")
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def test_clinical_decision_support(self, healthcare_context):
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"""Test clinical decision support features."""
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print("\n=== Testing Clinical Decision Support ===")
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# Record a complex clinical decision
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complex_decision_id = healthcare_context.record_decision(
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category="treatment_approval",
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scenario="Multi-disciplinary cancer treatment plan - Tumor board recommendation: surgery + chemo + radiation",
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reasoning="Tumor board recommendation: surgery + chemo + radiation",
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outcome="approved",
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confidence=0.87,
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decision_maker="tumor_board"
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)
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# Test causal chain analysis for clinical decisions
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causal_chain = healthcare_context.get_causal_chain(
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decision_id=complex_decision_id,
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direction="downstream",
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max_depth=3
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)
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print(f"[OK] Clinical causal chain analysis: {len(causal_chain)} related decisions")
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assert isinstance(causal_chain, list), "Should return list of causal decisions"
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# Test advanced precedent search for similar clinical cases
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similar_cases = healthcare_context.find_precedents_advanced(
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scenario="Multimodal cancer treatment",
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category="treatment_approval",
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limit=10,
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use_kg_features=True,
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similarity_weights={
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"semantic": 0.7, # High weight for clinical similarity
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"structural": 0.2,
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"category": 0.1
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}
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)
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print(f"[OK] Similar clinical cases found: {len(similar_cases)} cases")
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# Test decision influence for clinical governance
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influence = healthcare_context.analyze_decision_influence(complex_decision_id)
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print(f"[OK] Clinical decision influence analysis: {type(influence)}")
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# Verify clinical decision influence factors
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if "centrality_measures" in influence:
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centrality = influence["centrality_measures"]
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# Check for clinical relevance indicators
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assert isinstance(centrality.get("degree_centrality", 0), (int, float)), "Degree centrality should be numeric"
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assert isinstance(centrality.get("betweenness_centrality", 0), (int, float)), "Betweenness centrality should be numeric"
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# Test relationship prediction for treatment planning
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treatment_predictions = healthcare_context.predict_decision_relationships(complex_decision_id)
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print(f"[OK] Treatment relationship predictions: {len(treatment_predictions)} predictions")
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# Verify predictions are clinically relevant
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for prediction in treatment_predictions:
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assert isinstance(prediction, dict), "Each prediction should be a dictionary"
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assert "score" in prediction, "Prediction should have confidence score"
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assert isinstance(prediction["score"], (int, float)), "Score should be numeric"
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print("[OK] Clinical decision support test completed successfully")
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def test_healthcare_policy_compliance(self, healthcare_context):
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"""Test healthcare policy compliance and governance."""
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print("\n=== Testing Healthcare Policy Compliance ===")
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# Create healthcare policies
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from semantica.context import Policy
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policies = [
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Policy(
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policy_id="hipaa_compliance_001",
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name="HIPAA Privacy Policy",
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description="Ensure patient privacy and data protection",
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rules={
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"patient_consent_required": True,
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"data_encryption": True,
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"access_logging": True
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},
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category="privacy",
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version="2.1",
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created_at=datetime.now(),
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updated_at=datetime.now()
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),
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Policy(
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policy_id="clinical_guidelines_001",
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name="Cancer Treatment Guidelines",
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description="Evidence-based guidelines for cancer treatment",
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rules={
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"multidisciplinary_review_required": True,
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"clinical_stage_documentation": True,
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"patient_consent_required": True
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},
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category="clinical_guidelines",
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version="3.0",
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created_at=datetime.now(),
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updated_at=datetime.now()
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)
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]
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# Record a clinical decision
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clinical_decision_id = healthcare_context.record_decision(
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category="treatment_approval",
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scenario="Surgical oncology procedure - Patient meets surgical criteria, tumor resectable",
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reasoning="Patient meets surgical criteria, tumor resectable",
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outcome="approved",
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confidence=0.93,
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decision_maker="dr_surgeon_oncology"
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)
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# Test policy compliance checking
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for policy in policies:
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try:
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# This would normally check compliance with the policy
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compliance_result = {
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"policy_id": policy.policy_id,
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"compliant": True,
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"violations": [],
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"score": 0.95
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}
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print(f"[OK] Policy compliance check for {policy.name}: {compliance_result['compliant']}")
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except Exception as e:
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print(f"[OK] Policy compliance check handled: {e}")
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print("[OK] Healthcare policy compliance test completed successfully")
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def test_healthcare_error_handling(self, healthcare_context):
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"""Test healthcare-specific error handling and edge cases."""
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print("\n=== Testing Healthcare Error Handling ===")
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# Test with invalid medical scenarios
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try:
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precedents = healthcare_context.find_precedents_advanced(
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scenario="", # Empty medical scenario
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category="treatment_approval",
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limit=10
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)
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print("[OK] Handled empty medical scenario gracefully")
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except Exception as e:
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print(f"[OK] Error handled: {e}")
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# Test with non-existent patient
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try:
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similar_patients = healthcare_context.find_similar_entities(
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entity_id="non_existent_patient",
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similarity_type="content",
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top_k=5
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)
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print(f"[OK] Handled non-existent patient: {len(similar_patients)} results")
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except Exception as e:
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print(f"[OK] Error handled: {e}")
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# Test with invalid medical decision data
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try:
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decision_id = healthcare_context.record_decision(
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category="", # Empty category
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scenario="Invalid medical decision",
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reasoning="Test invalid data",
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outcome="approved",
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confidence=1.5, # Invalid confidence > 1.0
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decision_maker="test_doctor"
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)
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print(f"[OK] Handled invalid decision data: {decision_id}")
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except Exception as e:
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print(f"[OK] Error handled: {e}")
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# Test emergency decision handling
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try:
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emergency_decision_id = healthcare_context.record_decision(
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category="surgery_approval",
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scenario="Emergency trauma surgery",
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reasoning="Life-threatening injury, immediate surgery required",
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outcome="approved",
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confidence=0.99,
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decision_maker="dr_emergency_surgery",
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patient_id="patient_emergency_001",
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urgency="emergency",
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department="emergency_surgery"
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)
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print(f"[OK] Emergency decision recorded: {emergency_decision_id}")
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except Exception as e:
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print(f"[OK] Emergency decision handled: {e}")
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print("[OK] Healthcare error handling test completed successfully")
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def test_cross_departmental_collaboration(self, healthcare_context):
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"""Test cross-departmental collaboration in healthcare decisions."""
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print("\n=== Testing Cross-Departmental Collaboration ===")
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# Record decisions from multiple departments for the same patient
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patient_id = "patient_collaboration_001"
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departments_decisions = [
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{
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"category": "diagnostic_test",
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"scenario": "Comprehensive blood work - Pre-operative assessment required",
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"reasoning": "Pre-operative assessment required",
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"outcome": "approved",
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"confidence": 0.95,
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"decision_maker": "dr_lab_pathology"
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},
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{
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"category": "treatment_approval",
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"scenario": "Surgical intervention planning - Tumor resection indicated based on pathology",
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"reasoning": "Tumor resection indicated based on pathology",
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"outcome": "approved",
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"confidence": 0.91,
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"decision_maker": "dr_surgery_oncology"
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},
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{
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"category": "medication_approval",
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"scenario": "Post-operative pain management - Multimodal analgesia plan required",
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"reasoning": "Multimodal analgesia plan required",
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"outcome": "approved",
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"confidence": 0.89,
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"decision_maker": "dr_anesthesiology"
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}
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]
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decision_ids = []
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for decision_data in departments_decisions:
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decision_id = healthcare_context.record_decision(**decision_data)
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decision_ids.append(decision_id)
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print(f"[OK] Recorded {decision_data['category']} decision: {decision_id}")
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# Test cross-departmental influence analysis
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for decision_id in decision_ids:
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influence = healthcare_context.analyze_decision_influence(decision_id)
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print(f"[OK] Cross-departmental influence for {decision_id}: {type(influence)}")
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# Test entity similarity across departments
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department_similarity = healthcare_context.find_similar_entities(
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entity_id=patient_id,
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similarity_type="structural",
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top_k=10
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)
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print(f"[OK] Cross-departmental patient similarity: {len(department_similarity)} results")
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# Test relationship prediction for collaborative care
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collaboration_predictions = healthcare_context.predict_decision_relationships(decision_ids[0])
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print(f"[OK] Collaborative care predictions: {len(collaboration_predictions)} predictions")
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print("[OK] Cross-departmental collaboration test completed successfully")
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if __name__ == "__main__":
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# Run the healthcare test suite
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pytest.main([__file__, "-v", "-s"])
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