feat: add Apache Arrow exporter

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Sameer6305
2026-02-02 22:56:53 +05:30
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# Apache Arrow Exporter
## Overview
The Apache Arrow exporter provides high-performance columnar data export for Semantica's knowledge graphs, entities, and relationships. It uses explicit schemas (no inference) and writes Arrow IPC files (.arrow) that are compatible with Pandas and DuckDB.
## Features
- **Explicit Schemas**: Pre-defined schemas for entities and relationships (no inference)
- **Columnar Format**: Efficient storage and fast analytics
- **Metadata Support**: Converts metadata dictionaries to Arrow struct fields
- **Field Normalization**: Handles various entity and relationship field name variations
- **Progress Tracking**: Integrated progress monitoring
- **Error Handling**: Structured error handling with detailed logging
- **Pandas/DuckDB Compatible**: Direct conversion to DataFrames and SQL queries
## Installation
The Arrow exporter requires PyArrow:
```bash
pip install pyarrow
```
## Usage
### Basic Usage
```python
from semantica.export import ArrowExporter
# Initialize exporter
exporter = ArrowExporter()
# Export entities
entities = [
{"id": "e1", "text": "Alice", "type": "Person", "confidence": 0.95},
{"id": "e2", "text": "Acme Corp", "type": "Organization", "confidence": 0.88}
]
exporter.export_entities(entities, "entities.arrow")
# Export relationships
relationships = [
{"id": "r1", "source_id": "e1", "target_id": "e2", "type": "WORKS_FOR"}
]
exporter.export_relationships(relationships, "relationships.arrow")
# Export knowledge graph
knowledge_graph = {
"entities": entities,
"relationships": relationships
}
exporter.export_knowledge_graph(knowledge_graph, "kg_base")
# Creates: kg_base_entities.arrow, kg_base_relationships.arrow
```
### Using Convenience Function
```python
from semantica.export import export_arrow
# Simple export
export_arrow(entities, "entities.arrow")
# Export multiple types
data = {
"entities": entities,
"relationships": relationships
}
export_arrow(data, "output_base")
```
### With Compression
```python
# Use LZ4 compression
exporter = ArrowExporter(compression="lz4")
exporter.export_entities(entities, "entities_compressed.arrow")
```
## Schemas
### Entity Schema
```python
ENTITY_SCHEMA = pa.schema([
pa.field("id", pa.string(), nullable=False),
pa.field("text", pa.string(), nullable=True),
pa.field("type", pa.string(), nullable=True),
pa.field("confidence", pa.float64(), nullable=True),
pa.field("start", pa.int64(), nullable=True),
pa.field("end", pa.int64(), nullable=True),
pa.field("metadata", pa.struct([
pa.field("keys", pa.list_(pa.string())),
pa.field("values", pa.list_(pa.string()))
]), nullable=True),
])
```
### Relationship Schema
```python
RELATIONSHIP_SCHEMA = pa.schema([
pa.field("id", pa.string(), nullable=False),
pa.field("source_id", pa.string(), nullable=False),
pa.field("target_id", pa.string(), nullable=False),
pa.field("type", pa.string(), nullable=True),
pa.field("confidence", pa.float64(), nullable=True),
pa.field("metadata", pa.struct([
pa.field("keys", pa.list_(pa.string())),
pa.field("values", pa.list_(pa.string()))
]), nullable=True),
])
```
## Field Normalization
The exporter automatically normalizes field names:
**Entities:**
- `text`, `label`, `name``text`
- `type`, `entity_type``type`
- `id`, `entity_id``id`
- `start`, `start_offset``start`
- `end`, `end_offset``end`
**Relationships:**
- `source`, `source_id``source_id`
- `target`, `target_id``target_id`
- `type`, `relationship_type``type`
## Reading Arrow Files
### With PyArrow
```python
import pyarrow as pa
import pyarrow.ipc as ipc
with pa.OSFile("entities.arrow", 'rb') as source:
with ipc.open_file(source) as reader:
table = reader.read_all()
print(table.schema)
print(table.to_pandas())
```
### With Pandas
```python
import pandas as pd
import pyarrow.ipc as ipc
with ipc.open_file("entities.arrow") as reader:
df = reader.read_all().to_pandas()
print(df)
```
### With DuckDB
```python
import duckdb
# Query Arrow file directly
result = duckdb.query("SELECT * FROM 'entities.arrow' WHERE type = 'Person'")
print(result.df())
```
## Methods
### `export(data, file_path, schema=None, **options)`
Generic export method that handles both single and multiple files.
**Parameters:**
- `data`: List of dicts or dict with list values
- `file_path`: Output file path (base path for dict exports)
- `schema`: Optional Arrow schema (auto-detected if not provided)
- `**options`: Additional options
### `export_entities(entities, file_path, **options)`
Export entities to Arrow IPC file with normalization.
**Parameters:**
- `entities`: List of entity dictionaries
- `file_path`: Output Arrow file path
- `**options`: Additional options
### `export_relationships(relationships, file_path, **options)`
Export relationships to Arrow IPC file with normalization.
**Parameters:**
- `relationships`: List of relationship dictionaries
- `file_path`: Output Arrow file path
- `**options`: Additional options
### `export_knowledge_graph(knowledge_graph, base_path, **options)`
Export knowledge graph to multiple Arrow files.
**Parameters:**
- `knowledge_graph`: Knowledge graph dictionary with 'entities' and 'relationships'
- `base_path`: Base path for output files (without extension)
- `**options`: Additional options
## Examples
See `examples/arrow_export_example.py` for comprehensive usage examples.
## Testing
Run the test suite:
```bash
# All Arrow exporter tests
pytest tests/test_arrow_exporter.py -v
# Integration tests
pytest tests/test_export_module.py::TestExportModule::test_arrow_exporter -v
```
## Performance Benefits
- **Columnar Storage**: Faster analytics on specific columns
- **Compression**: Smaller file sizes (especially with LZ4/ZSTD)
- **Zero-Copy**: Memory-efficient data transfer
- **Cross-Language**: Works with Python, R, Julia, JavaScript, and more
- **SQL Queries**: Direct querying with DuckDB without loading into memory
## Comparison with Other Formats
| Feature | Arrow | CSV | JSON |
|---------|-------|-----|------|
| Type Safety | ✓ | ✗ | ✗ |
| Compression | ✓ | ✗ | ✗ |
| Schema Validation | ✓ | ✗ | ✗ |
| Pandas Compatible | ✓ | ✓ | ✓ |
| DuckDB Native | ✓ | ✓ | ✗ |
| Binary Format | ✓ | ✗ | ✗ |
| Human Readable | ✗ | ✓ | ✓ |
## Architecture
The Arrow exporter follows Semantica's export architecture:
1. **Normalization**: Field names are normalized to consistent format
2. **Schema Application**: Explicit schemas ensure type safety
3. **Metadata Conversion**: Dicts converted to Arrow struct fields
4. **Progress Tracking**: Integrated with Semantica's progress tracker
5. **Error Handling**: Structured exceptions with detailed messages
## Contributing
When contributing to the Arrow exporter:
1. Maintain explicit schemas (no inference)
2. Follow existing code style and patterns
3. Add comprehensive tests for new features
4. Update this documentation
5. Ensure Pandas/DuckDB compatibility
## License
MIT License - See LICENSE file for details.
## Author
Semantica Contributors
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"""
Apache Arrow Exporter - Example Usage
This script demonstrates how to use the ArrowExporter to export
knowledge graphs, entities, and relationships to Apache Arrow format.
"""
from semantica.export import ArrowExporter, export_arrow
from pathlib import Path
import tempfile
def main():
print("=" * 70)
print("Apache Arrow Exporter - Example Usage")
print("=" * 70)
# Create a temporary directory for outputs
temp_dir = Path(tempfile.mkdtemp())
print(f"\n📁 Output directory: {temp_dir}\n")
# Sample data
entities = [
{
"id": "e1",
"text": "Alice",
"type": "Person",
"confidence": 0.95,
"start": 0,
"end": 5,
"metadata": {"age": 30, "city": "New York"}
},
{
"id": "e2",
"text": "Acme Corp",
"type": "Organization",
"confidence": 0.88,
"start": 10,
"end": 19,
"metadata": {"location": "NY", "employees": 100}
},
{
"id": "e3",
"text": "Bob",
"type": "Person",
"confidence": 0.92,
"metadata": {"age": 35, "department": "Engineering"}
}
]
relationships = [
{
"id": "r1",
"source_id": "e1",
"target_id": "e2",
"type": "WORKS_FOR",
"confidence": 0.90,
"metadata": {"role": "Engineer", "since": 2020}
},
{
"id": "r2",
"source_id": "e3",
"target_id": "e2",
"type": "WORKS_FOR",
"confidence": 0.85,
"metadata": {"role": "Manager", "since": 2018}
}
]
knowledge_graph = {
"entities": entities,
"relationships": relationships,
"metadata": {"version": "1.0", "created": "2024-01-01"}
}
# Example 1: Export entities using ArrowExporter class
print("Example 1: Export entities to Arrow")
print("-" * 70)
exporter = ArrowExporter()
entities_path = temp_dir / "entities.arrow"
exporter.export_entities(entities, entities_path)
print(f"✓ Entities exported to: {entities_path}")
print(f" File size: {entities_path.stat().st_size} bytes\n")
# Example 2: Export relationships
print("Example 2: Export relationships to Arrow")
print("-" * 70)
rels_path = temp_dir / "relationships.arrow"
exporter.export_relationships(relationships, rels_path)
print(f"✓ Relationships exported to: {rels_path}")
print(f" File size: {rels_path.stat().st_size} bytes\n")
# Example 3: Export complete knowledge graph
print("Example 3: Export knowledge graph to multiple Arrow files")
print("-" * 70)
kg_base_path = temp_dir / "knowledge_graph"
exporter.export_knowledge_graph(knowledge_graph, kg_base_path)
kg_entities = temp_dir / "knowledge_graph_entities.arrow"
kg_rels = temp_dir / "knowledge_graph_relationships.arrow"
print(f"✓ Knowledge graph exported to:")
print(f" - {kg_entities} ({kg_entities.stat().st_size} bytes)")
print(f" - {kg_rels} ({kg_rels.stat().st_size} bytes)\n")
# Example 4: Use convenience function
print("Example 4: Using export_arrow convenience function")
print("-" * 70)
export_path = temp_dir / "entities_via_function.arrow"
export_arrow(entities, export_path)
print(f"✓ Exported using convenience function: {export_path}")
print(f" File size: {export_path.stat().st_size} bytes\n")
# Example 5: Read back with PyArrow (if available)
try:
import pyarrow as pa
import pyarrow.ipc as ipc
print("Example 5: Reading Arrow file with PyArrow")
print("-" * 70)
with pa.OSFile(str(entities_path), 'rb') as source:
with ipc.open_file(source) as reader:
table = reader.read_all()
print(f"✓ Table schema:")
print(f" {table.schema}")
print(f"\n✓ Table data ({table.num_rows} rows):")
print(f" {table.to_pandas()}\n")
# Example 6: Convert to Pandas DataFrame
print("Example 6: Convert to Pandas DataFrame")
print("-" * 70)
df = table.to_pandas()
print(f"✓ DataFrame shape: {df.shape}")
print(f"✓ DataFrame columns: {list(df.columns)}")
print(f"\n{df}\n")
except ImportError:
print("⚠ PyArrow not available for reading examples\n")
print("=" * 70)
print("✅ All examples completed successfully!")
print("=" * 70)
print(f"\n💡 Tip: Arrow files are columnar and highly compressed,")
print(f" perfect for analytics and compatible with Pandas/DuckDB!\n")
# Cleanup
import shutil
print(f"🗑 Cleaning up: {temp_dir}")
shutil.rmtree(temp_dir)
print("Done!\n")
if __name__ == "__main__":
main()
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@@ -120,12 +120,14 @@ Author: Semantica Contributors
License: MIT
"""
from .arrow_exporter import ArrowExporter
from .config import ExportConfig, export_config
from .csv_exporter import CSVExporter
from .graph_exporter import GraphExporter
from .json_exporter import JSONExporter
from .lpg_exporter import LPGExporter
from .methods import (
export_arrow,
export_csv,
export_graph,
export_json,
@@ -153,6 +155,7 @@ __all__ = [
"NamespaceManager",
"JSONExporter",
"CSVExporter",
"ArrowExporter",
"GraphExporter",
"SemanticNetworkYAMLExporter",
"YAMLSchemaExporter",
@@ -166,6 +169,7 @@ __all__ = [
"export_rdf",
"export_json",
"export_csv",
"export_arrow",
"export_graph",
"export_yaml",
"export_owl",
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"""
Apache Arrow Exporter Module
This module provides comprehensive Apache Arrow export capabilities for the
Semantica framework, enabling high-performance columnar data export for entities,
relationships, and knowledge graphs.
Key Features:
- Arrow IPC file export (.arrow)
- Explicit schema definition (no inference)
- Entity and relationship export with metadata
- Knowledge graph export to multiple Arrow files
- Pandas and DuckDB compatible
- Batch export processing
- Structured metadata handling
Example Usage:
>>> from semantica.export import ArrowExporter
>>> exporter = ArrowExporter()
>>> exporter.export_entities(entities, "entities.arrow")
>>> exporter.export_knowledge_graph(kg, "kg_base")
Author: Semantica Contributors
License: MIT
"""
import json
from pathlib import Path
from typing import Any, Dict, List, Optional, Union
try:
import pyarrow as pa
import pyarrow.ipc as ipc
ARROW_AVAILABLE = True
except ImportError:
ARROW_AVAILABLE = False
from ..utils.exceptions import ProcessingError, ValidationError
from ..utils.helpers import ensure_directory
from ..utils.logging import get_logger
from ..utils.progress_tracker import get_progress_tracker
# Explicit Arrow Schemas (no inference)
ENTITY_SCHEMA = pa.schema([
pa.field("id", pa.string(), nullable=False),
pa.field("text", pa.string(), nullable=True),
pa.field("type", pa.string(), nullable=True),
pa.field("confidence", pa.float64(), nullable=True),
pa.field("start", pa.int64(), nullable=True),
pa.field("end", pa.int64(), nullable=True),
pa.field("metadata", pa.struct([
pa.field("keys", pa.list_(pa.string())),
pa.field("values", pa.list_(pa.string()))
]), nullable=True),
])
RELATIONSHIP_SCHEMA = pa.schema([
pa.field("id", pa.string(), nullable=False),
pa.field("source_id", pa.string(), nullable=False),
pa.field("target_id", pa.string(), nullable=False),
pa.field("type", pa.string(), nullable=True),
pa.field("confidence", pa.float64(), nullable=True),
pa.field("metadata", pa.struct([
pa.field("keys", pa.list_(pa.string())),
pa.field("values", pa.list_(pa.string()))
]), nullable=True),
])
class ArrowExporter:
"""
Apache Arrow exporter for knowledge graphs and structured data.
This class provides comprehensive Arrow IPC export functionality for entities,
relationships, and knowledge graphs. Uses explicit schemas for type safety
and compatibility with Pandas and DuckDB.
Features:
- Entity and relationship export
- Knowledge graph export to multiple Arrow files
- Explicit schema definition (no inference)
- Metadata serialization as Arrow struct fields
- Pandas and DuckDB compatible
- Progress tracking and error handling
Example Usage:
>>> exporter = ArrowExporter()
>>> exporter.export_entities(entities, "entities.arrow")
>>> exporter.export_knowledge_graph(kg, "output_base")
"""
def __init__(
self,
compression: Optional[str] = None,
config: Optional[Dict[str, Any]] = None,
**kwargs,
):
"""
Initialize Arrow exporter.
Sets up the exporter with specified Arrow formatting options.
Args:
compression: Compression codec (default: None)
- None: No compression
- "lz4": LZ4 compression
- "zstd": Zstandard compression
config: Optional configuration dictionary (merged with kwargs)
**kwargs: Additional configuration options
Raises:
ImportError: If pyarrow is not installed
"""
if not ARROW_AVAILABLE:
raise ImportError(
"pyarrow is not installed. Please install it with: "
"pip install pyarrow"
)
self.logger = get_logger("arrow_exporter")
self.config = config or {}
self.config.update(kwargs)
# Arrow configuration
self.compression = compression
# Initialize progress tracker
self.progress_tracker = get_progress_tracker()
# Ensure progress tracker is enabled
if not self.progress_tracker.enabled:
self.progress_tracker.enabled = True
self.logger.debug(
f"Arrow exporter initialized: compression={compression}"
)
def export(
self,
data: Union[List[Dict[str, Any]], Dict[str, Any]],
file_path: Union[str, Path],
schema: Optional[pa.Schema] = None,
**options,
) -> None:
"""
Export data to Arrow IPC file(s).
This method handles both single Arrow file export (from list) and multiple
Arrow file export (from dictionary with multiple keys).
Args:
data: Data to export:
- List of dicts: Exports to single Arrow file
- Dict with list values: Exports each key as separate Arrow file
file_path: Output file path (base path for dict exports)
schema: Arrow schema to use (default: auto-select based on data)
**options: Additional options
Raises:
ValidationError: If data type is unsupported
Example:
>>> # Single Arrow file
>>> exporter.export([{"id": "1", "name": "A"}], "data.arrow")
>>> # Multiple Arrow files
>>> exporter.export(
... {"entities": [...], "relationships": [...]},
... "output_base"
... )
"""
# Track Arrow export
tracking_id = self.progress_tracker.start_tracking(
file=str(file_path),
module="export",
submodule="ArrowExporter",
message=f"Exporting data to Arrow: {file_path}",
)
try:
file_path = Path(file_path)
ensure_directory(file_path.parent)
self.logger.debug(f"Exporting data to Arrow: {file_path}")
# Handle different data structures
if isinstance(data, dict):
# Export each key as separate Arrow file
exported_files = []
self.progress_tracker.update_tracking(
tracking_id, message=f"Exporting {len(data)} data groups..."
)
for key, value in data.items():
if isinstance(value, list):
output_path = file_path.parent / f"{file_path.stem}_{key}.arrow"
# Select schema based on key
key_schema = schema
if key == "entities" and schema is None:
key_schema = ENTITY_SCHEMA
elif key == "relationships" and schema is None:
key_schema = RELATIONSHIP_SCHEMA
self._write_arrow(value, output_path, schema=key_schema, **options)
exported_files.append(output_path)
else:
self.logger.warning(
f"Skipping key '{key}': value is not a list (type: {type(value)})"
)
self.logger.info(
f"Exported {len(exported_files)} Arrow file(s) from dictionary: "
f"{', '.join(str(f) for f in exported_files)}"
)
self.progress_tracker.stop_tracking(
tracking_id,
status="completed",
message=f"Exported {len(exported_files)} Arrow files",
)
elif isinstance(data, list):
# Single Arrow file
self.progress_tracker.update_tracking(
tracking_id, message=f"Exporting {len(data)} records..."
)
self._write_arrow(data, file_path, schema=schema, **options)
self.logger.info(f"Exported Arrow to: {file_path}")
self.progress_tracker.stop_tracking(
tracking_id,
status="completed",
message=f"Exported Arrow to: {file_path}",
)
else:
raise ValidationError(
f"Unsupported data type: {type(data)}. "
"Expected list of dicts or dict with list values."
)
except Exception as e:
self.progress_tracker.stop_tracking(
tracking_id, status="failed", message=str(e)
)
raise
def export_entities(
self, entities: List[Dict[str, Any]], file_path: Union[str, Path], **options
) -> None:
"""
Export entities to Arrow IPC file.
This method normalizes entity data to a consistent format and exports
to Arrow using the explicit ENTITY_SCHEMA. Handles various entity field
name variations and serializes metadata as Arrow struct fields.
Normalized Fields:
- id: Entity identifier (string)
- text: Entity text/label/name (string)
- type: Entity type (string)
- confidence: Confidence score (float64)
- start: Start offset/position (int64)
- end: End offset/position (int64)
- metadata: Metadata as Arrow struct (keys and values lists)
Args:
entities: List of entity dictionaries with various field names
file_path: Output Arrow file path
**options: Additional options
Raises:
ValidationError: If entities list is empty
Example:
>>> entities = [
... {"id": "e1", "text": "Entity 1", "type": "PERSON"},
... {"id": "e2", "label": "Entity 2", "entity_type": "ORG"}
... ]
>>> exporter.export_entities(entities, "entities.arrow")
"""
if not entities:
raise ValidationError("No entities to export. Entities list is empty.")
self.logger.debug(f"Exporting {len(entities)} entity(ies) to Arrow")
# Normalize entity data to consistent format
normalized_entities = []
for i, entity in enumerate(entities):
if not isinstance(entity, dict):
self.logger.warning(f"Entity {i} is not a dictionary, skipping")
continue
# Extract and normalize fields
entity_id = entity.get("id") or entity.get("entity_id", "")
text = entity.get("text") or entity.get("label") or entity.get("name") or ""
entity_type = entity.get("type") or entity.get("entity_type", "")
confidence = entity.get("confidence")
start = entity.get("start") or entity.get("start_offset")
end = entity.get("end") or entity.get("end_offset")
# Convert confidence to float
if confidence is not None:
try:
confidence = float(confidence)
except (TypeError, ValueError):
self.logger.warning(
f"Invalid confidence value for entity {i}: {confidence}. Setting to None."
)
confidence = None
# Convert start/end to int
if start is not None:
try:
start = int(start)
except (TypeError, ValueError):
start = None
if end is not None:
try:
end = int(end)
except (TypeError, ValueError):
end = None
# Convert metadata dict to Arrow struct
metadata = None
if "metadata" in entity and entity["metadata"]:
metadata = self._dict_to_struct(entity["metadata"])
normalized = {
"id": str(entity_id),
"text": str(text) if text else None,
"type": str(entity_type) if entity_type else None,
"confidence": confidence,
"start": start,
"end": end,
"metadata": metadata,
}
normalized_entities.append(normalized)
self.logger.debug(
f"Normalized {len(normalized_entities)} entity(ies) for Arrow export"
)
self._write_arrow(normalized_entities, file_path, schema=ENTITY_SCHEMA, **options)
def export_relationships(
self,
relationships: List[Dict[str, Any]],
file_path: Union[str, Path],
**options,
) -> None:
"""
Export relationships to Arrow IPC file.
This method normalizes relationship data to a consistent format and exports
to Arrow using the explicit RELATIONSHIP_SCHEMA. Handles various relationship
field name variations and serializes metadata as Arrow struct fields.
Normalized Fields:
- id: Relationship identifier (string)
- source_id: Source entity identifier (string)
- target_id: Target entity identifier (string)
- type: Relationship type (string)
- confidence: Confidence score (float64)
- metadata: Metadata as Arrow struct (keys and values lists)
Args:
relationships: List of relationship dictionaries with various field names
file_path: Output Arrow file path
**options: Additional options
Raises:
ValidationError: If relationships list is empty
Example:
>>> relationships = [
... {"id": "r1", "source_id": "e1", "target_id": "e2", "type": "RELATED_TO"},
... {"source": "e2", "target": "e3", "relationship_type": "CONTAINS"}
... ]
>>> exporter.export_relationships(relationships, "relationships.arrow")
"""
if not relationships:
raise ValidationError(
"No relationships to export. Relationships list is empty."
)
self.logger.debug(f"Exporting {len(relationships)} relationship(s) to Arrow")
# Normalize relationship data to consistent format
normalized_rels = []
for i, rel in enumerate(relationships):
if not isinstance(rel, dict):
self.logger.warning(f"Relationship {i} is not a dictionary, skipping")
continue
# Extract and normalize fields
rel_id = rel.get("id", f"rel_{i}")
source_id = rel.get("source_id") or rel.get("source", "")
target_id = rel.get("target_id") or rel.get("target", "")
rel_type = rel.get("type") or rel.get("relationship_type", "")
confidence = rel.get("confidence")
# Convert confidence to float
if confidence is not None:
try:
confidence = float(confidence)
except (TypeError, ValueError):
self.logger.warning(
f"Invalid confidence value for relationship {i}: {confidence}. Setting to None."
)
confidence = None
# Convert metadata dict to Arrow struct
metadata = None
if "metadata" in rel and rel["metadata"]:
metadata = self._dict_to_struct(rel["metadata"])
normalized = {
"id": str(rel_id),
"source_id": str(source_id),
"target_id": str(target_id),
"type": str(rel_type) if rel_type else None,
"confidence": confidence,
"metadata": metadata,
}
normalized_rels.append(normalized)
self.logger.debug(
f"Normalized {len(normalized_rels)} relationship(s) for Arrow export"
)
self._write_arrow(normalized_rels, file_path, schema=RELATIONSHIP_SCHEMA, **options)
def export_knowledge_graph(
self, knowledge_graph: Dict[str, Any], base_path: Union[str, Path], **options
) -> None:
"""
Export knowledge graph to multiple Arrow IPC files.
This method exports a knowledge graph to separate Arrow files for entities
and relationships. Each component is exported to its own file with a naming
pattern: `{base_path}_entities.arrow`, etc.
Exported Files:
- {base_path}_entities.arrow: Entity data
- {base_path}_relationships.arrow: Relationship data
Args:
knowledge_graph: Knowledge graph dictionary containing:
- entities: List of entity dictionaries
- relationships: List of relationship dictionaries
base_path: Base path for output files (without extension)
**options: Additional options passed to export methods
Example:
>>> kg = {
... "entities": [...],
... "relationships": [...]
... }
>>> exporter.export_knowledge_graph(kg, "output_base")
>>> # Creates: output_base_entities.arrow, output_base_relationships.arrow
"""
base_path = Path(base_path)
self.logger.debug(
f"Exporting knowledge graph to Arrow files: base_path={base_path}"
)
exported_files = []
# Export entities
entities = knowledge_graph.get("entities", [])
if entities:
entities_path = base_path.parent / f"{base_path.stem}_entities.arrow"
self.export_entities(entities, entities_path, **options)
exported_files.append(entities_path)
self.logger.debug(
f"Exported {len(entities)} entity(ies) to {entities_path}"
)
else:
self.logger.debug("No entities found in knowledge graph")
# Export relationships
relationships = knowledge_graph.get("relationships", [])
if relationships:
rels_path = base_path.parent / f"{base_path.stem}_relationships.arrow"
self.export_relationships(relationships, rels_path, **options)
exported_files.append(rels_path)
self.logger.debug(
f"Exported {len(relationships)} relationship(s) to {rels_path}"
)
else:
self.logger.debug("No relationships found in knowledge graph")
if exported_files:
self.logger.info(
f"Exported knowledge graph to {len(exported_files)} Arrow file(s): "
f"{', '.join(str(f) for f in exported_files)}"
)
else:
self.logger.warning("No data found in knowledge graph to export")
def _dict_to_struct(self, metadata: Dict[str, Any]) -> Dict[str, List]:
"""
Convert metadata dictionary to Arrow struct format.
Converts a dictionary into a struct with keys and values lists,
suitable for Arrow struct fields.
Args:
metadata: Metadata dictionary to convert
Returns:
Dict with 'keys' and 'values' lists (both strings)
"""
if not isinstance(metadata, dict):
return None
keys = []
values = []
for k, v in metadata.items():
keys.append(str(k))
# Convert value to JSON string if it's not a simple type
if isinstance(v, (dict, list)):
try:
values.append(json.dumps(v))
except (TypeError, ValueError):
values.append(str(v))
else:
values.append(str(v) if v is not None else "")
return {"keys": keys, "values": values}
def _write_arrow(
self,
data: List[Dict[str, Any]],
file_path: Path,
schema: Optional[pa.Schema] = None,
**options,
) -> None:
"""
Write data to Arrow IPC file.
This internal method handles the actual Arrow file writing, including
schema validation and batch writing.
Args:
data: List of dictionaries to write as Arrow records
file_path: Output Arrow file path
schema: Arrow schema to use (if None, will try to infer from data structure)
**options: Unused (for compatibility)
Raises:
ValidationError: If data list is empty or schema cannot be determined
ProcessingError: If file writing fails
"""
if not data:
raise ValidationError("No data to write. Data list is empty.")
# If schema is not provided, try to infer from data structure
if schema is None:
# Try to detect if data looks like entities or relationships
sample = data[0] if data else {}
# Check for relationship-specific fields
has_source = any(k in sample for k in ['source_id', 'source'])
has_target = any(k in sample for k in ['target_id', 'target'])
# Check for entity-specific fields
has_text = any(k in sample for k in ['text', 'label', 'name'])
if has_source and has_target:
schema = RELATIONSHIP_SCHEMA
self.logger.debug("Auto-detected relationship schema")
elif has_text or 'type' in sample:
schema = ENTITY_SCHEMA
self.logger.debug("Auto-detected entity schema")
else:
raise ValidationError(
"Schema is required for Arrow export. "
"Cannot auto-detect schema from data structure. "
"Provide explicit schema or use export_entities/export_relationships methods."
)
self.logger.debug(
f"Writing Arrow IPC file: {len(data)} row(s), "
f"schema={schema}, file={file_path}"
)
try:
# Create Arrow table from data using explicit schema
table = pa.Table.from_pylist(data, schema=schema)
# Write to Arrow IPC file
with pa.OSFile(str(file_path), 'wb') as sink:
with ipc.new_file(sink, schema) as writer:
writer.write_table(table)
self.logger.debug(f"Successfully wrote Arrow IPC file: {file_path}")
except pa.ArrowInvalid as e:
error_msg = f"Arrow schema validation failed for {file_path}: {e}"
self.logger.error(error_msg)
raise ValidationError(error_msg) from e
except IOError as e:
error_msg = f"Failed to write Arrow file {file_path}: {e}"
self.logger.error(error_msg)
raise ProcessingError(error_msg) from e
except Exception as e:
error_msg = f"Unexpected error writing Arrow file: {e}"
self.logger.error(error_msg)
raise ProcessingError(error_msg) from e
+46
View File
@@ -155,6 +155,7 @@ from typing import Any, Callable, Dict, List, Optional, Union
from ..utils.exceptions import ConfigurationError, ProcessingError
from ..utils.logging import get_logger
from .arrow_exporter import ArrowExporter
from .config import export_config
from .csv_exporter import CSVExporter
from .graph_exporter import GraphExporter
@@ -317,6 +318,51 @@ def export_csv(
raise
def export_arrow(
data: Union[List[Dict[str, Any]], Dict[str, List[Dict[str, Any]]]],
file_path: Union[str, Path],
method: str = "default",
**kwargs,
) -> None:
"""
Export data to Apache Arrow format (convenience function).
This is a user-friendly wrapper that exports data to Arrow IPC format.
Args:
data: Data to export (list of dicts or dict with list values)
file_path: Output Arrow file path (or base path for multiple files)
method: Export method (default: "default")
**kwargs: Additional options passed to ArrowExporter
Examples:
>>> from semantica.export.methods import export_arrow
>>> export_arrow(entities, "entities.arrow")
>>> export_arrow({"entities": [...], "relationships": [...]}, "output_base")
"""
# Check for custom method in registry
custom_method = method_registry.get("arrow", method)
if custom_method and custom_method is not export_arrow:
try:
return custom_method(data, file_path, **kwargs)
except Exception as e:
logger.warning(
f"Custom method {method} failed: {e}, falling back to default"
)
try:
# Get config
config = export_config.get_method_config("arrow")
config.update(kwargs)
exporter = ArrowExporter(**config)
exporter.export(data, file_path, **kwargs)
except Exception as e:
logger.error(f"Failed to export Arrow: {e}")
raise
def export_graph(
graph_data: Dict[str, Any],
file_path: Union[str, Path],
+479
View File
@@ -0,0 +1,479 @@
"""
Unit tests for Apache Arrow exporter module.
Tests schema validation, data export, Pandas conversion, empty inputs,
and minimal graph structures.
"""
import os
import unittest
import shutil
import tempfile
from pathlib import Path
from unittest.mock import MagicMock, patch
# Try to import pyarrow
try:
import pyarrow as pa
import pyarrow.ipc as ipc
ARROW_AVAILABLE = True
except ImportError:
ARROW_AVAILABLE = False
from semantica.export import ArrowExporter
from semantica.utils.exceptions import ValidationError, ProcessingError
@unittest.skipIf(not ARROW_AVAILABLE, "pyarrow not installed")
class TestArrowExporter(unittest.TestCase):
"""Test cases for ArrowExporter class."""
def setUp(self):
"""Set up test fixtures."""
self.test_dir = tempfile.mkdtemp()
# Sample entities with various field names
self.entities = [
{
"id": "e1",
"type": "Person",
"name": "Alice",
"label": "Alice",
"confidence": 0.95,
"start": 0,
"end": 5,
"metadata": {"age": 30, "city": "NYC"}
},
{
"id": "e2",
"type": "Organization",
"text": "Acme Corp",
"entity_type": "ORG",
"confidence": 0.88,
"start_offset": 10,
"end_offset": 19,
"metadata": {"location": "NY", "employees": 100}
}
]
# Sample relationships
self.relationships = [
{
"id": "r1",
"source": "e1",
"target": "e2",
"type": "WORKS_FOR",
"confidence": 0.92,
"metadata": {"role": "Engineer", "since": 2020}
},
{
"source_id": "e2",
"target_id": "e1",
"relationship_type": "EMPLOYS",
"confidence": 0.90
}
]
# Knowledge graph
self.kg = {
"entities": self.entities,
"relationships": self.relationships,
"metadata": {"version": "1.0", "created": "2024-01-01"}
}
def tearDown(self):
"""Clean up test directory."""
shutil.rmtree(self.test_dir)
def test_initialization(self):
"""Test ArrowExporter initialization."""
exporter = ArrowExporter()
self.assertIsNotNone(exporter)
self.assertEqual(exporter.compression, None)
# Test with compression
exporter_compressed = ArrowExporter(compression="lz4")
self.assertEqual(exporter_compressed.compression, "lz4")
def test_initialization_without_pyarrow(self):
"""Test initialization fails gracefully without pyarrow."""
with patch.dict('sys.modules', {'pyarrow': None}):
# This test would need to reload the module
# For now, we just verify the constant
if not ARROW_AVAILABLE:
with self.assertRaises(ImportError):
from semantica.export.arrow_exporter import ArrowExporter as TestExporter
def test_export_entities_basic(self):
"""Test basic entity export to Arrow."""
exporter = ArrowExporter()
output_path = Path(self.test_dir) / "entities.arrow"
exporter.export_entities(self.entities, str(output_path))
self.assertTrue(output_path.exists())
# Read and verify Arrow file
with pa.OSFile(str(output_path), 'rb') as source:
with ipc.open_file(source) as reader:
table = reader.read_all()
# Verify schema
from semantica.export.arrow_exporter import ENTITY_SCHEMA
self.assertEqual(table.schema, ENTITY_SCHEMA)
# Verify data
self.assertEqual(table.num_rows, 2)
self.assertEqual(table.column('id')[0].as_py(), 'e1')
self.assertEqual(table.column('type')[0].as_py(), 'Person')
self.assertEqual(table.column('confidence')[0].as_py(), 0.95)
def test_export_entities_field_normalization(self):
"""Test entity field name normalization."""
exporter = ArrowExporter()
output_path = Path(self.test_dir) / "entities_normalized.arrow"
# Entities with various field name variations
varied_entities = [
{"id": "e1", "text": "Entity 1", "type": "TYPE1"},
{"entity_id": "e2", "label": "Entity 2", "entity_type": "TYPE2"},
{"id": "e3", "name": "Entity 3", "type": "TYPE3"}
]
exporter.export_entities(varied_entities, str(output_path))
self.assertTrue(output_path.exists())
# Read and verify normalization
with pa.OSFile(str(output_path), 'rb') as source:
with ipc.open_file(source) as reader:
table = reader.read_all()
self.assertEqual(table.num_rows, 3)
# All entities should have normalized fields
ids = table.column('id').to_pylist()
self.assertEqual(ids, ['e1', 'e2', 'e3'])
texts = table.column('text').to_pylist()
self.assertEqual(texts, ['Entity 1', 'Entity 2', 'Entity 3'])
def test_export_relationships_basic(self):
"""Test basic relationship export to Arrow."""
exporter = ArrowExporter()
output_path = Path(self.test_dir) / "relationships.arrow"
exporter.export_relationships(self.relationships, str(output_path))
self.assertTrue(output_path.exists())
# Read and verify Arrow file
with pa.OSFile(str(output_path), 'rb') as source:
with ipc.open_file(source) as reader:
table = reader.read_all()
# Verify data
self.assertEqual(table.num_rows, 2)
self.assertEqual(table.column('id')[0].as_py(), 'r1')
self.assertEqual(table.column('source_id')[0].as_py(), 'e1')
self.assertEqual(table.column('target_id')[0].as_py(), 'e2')
self.assertEqual(table.column('type')[0].as_py(), 'WORKS_FOR')
def test_export_knowledge_graph(self):
"""Test knowledge graph export to multiple Arrow files."""
exporter = ArrowExporter()
base_path = Path(self.test_dir) / "kg_output"
exporter.export_knowledge_graph(self.kg, str(base_path))
# Verify files created
entities_path = Path(self.test_dir) / "kg_output_entities.arrow"
relationships_path = Path(self.test_dir) / "kg_output_relationships.arrow"
self.assertTrue(entities_path.exists())
self.assertTrue(relationships_path.exists())
# Verify entities file
with pa.OSFile(str(entities_path), 'rb') as source:
with ipc.open_file(source) as reader:
table = reader.read_all()
self.assertEqual(table.num_rows, 2)
# Verify relationships file
with pa.OSFile(str(relationships_path), 'rb') as source:
with ipc.open_file(source) as reader:
table = reader.read_all()
self.assertEqual(table.num_rows, 2)
def test_export_empty_entities(self):
"""Test export with empty entity list."""
exporter = ArrowExporter()
output_path = Path(self.test_dir) / "empty_entities.arrow"
with self.assertRaises(ValidationError) as context:
exporter.export_entities([], str(output_path))
self.assertIn("No entities to export", str(context.exception))
def test_export_empty_relationships(self):
"""Test export with empty relationship list."""
exporter = ArrowExporter()
output_path = Path(self.test_dir) / "empty_rels.arrow"
with self.assertRaises(ValidationError) as context:
exporter.export_relationships([], str(output_path))
self.assertIn("No relationships to export", str(context.exception))
def test_export_minimal_graph(self):
"""Test export with minimal knowledge graph."""
exporter = ArrowExporter()
base_path = Path(self.test_dir) / "minimal_kg"
# Minimal graph with only entities
minimal_kg = {
"entities": [{"id": "e1", "text": "Entity 1", "type": "TYPE1"}],
"relationships": []
}
exporter.export_knowledge_graph(minimal_kg, str(base_path))
# Only entities file should be created
entities_path = Path(self.test_dir) / "minimal_kg_entities.arrow"
self.assertTrue(entities_path.exists())
def test_metadata_serialization(self):
"""Test metadata dictionary to Arrow struct conversion."""
exporter = ArrowExporter()
output_path = Path(self.test_dir) / "entities_metadata.arrow"
entities_with_metadata = [
{
"id": "e1",
"text": "Entity 1",
"type": "TYPE1",
"metadata": {
"key1": "value1",
"key2": 123,
"key3": {"nested": "dict"}
}
}
]
exporter.export_entities(entities_with_metadata, str(output_path))
self.assertTrue(output_path.exists())
# Read and verify metadata structure
with pa.OSFile(str(output_path), 'rb') as source:
with ipc.open_file(source) as reader:
table = reader.read_all()
# Verify metadata exists and is a struct
metadata_col = table.column('metadata')[0]
if metadata_col.is_valid:
metadata = metadata_col.as_py()
self.assertIn('keys', metadata)
self.assertIn('values', metadata)
self.assertIsInstance(metadata['keys'], list)
self.assertIsInstance(metadata['values'], list)
def test_schema_validation(self):
"""Test explicit schema validation."""
from semantica.export.arrow_exporter import ENTITY_SCHEMA, RELATIONSHIP_SCHEMA
# Verify entity schema structure
self.assertIsNotNone(ENTITY_SCHEMA)
self.assertIsInstance(ENTITY_SCHEMA, pa.Schema)
entity_fields = {field.name for field in ENTITY_SCHEMA}
expected_entity_fields = {'id', 'text', 'type', 'confidence', 'start', 'end', 'metadata'}
self.assertEqual(entity_fields, expected_entity_fields)
# Verify relationship schema structure
self.assertIsNotNone(RELATIONSHIP_SCHEMA)
self.assertIsInstance(RELATIONSHIP_SCHEMA, pa.Schema)
rel_fields = {field.name for field in RELATIONSHIP_SCHEMA}
expected_rel_fields = {'id', 'source_id', 'target_id', 'type', 'confidence', 'metadata'}
self.assertEqual(rel_fields, expected_rel_fields)
def test_pandas_conversion(self):
"""Test conversion to Pandas DataFrame."""
try:
import pandas as pd
exporter = ArrowExporter()
output_path = Path(self.test_dir) / "entities_pandas.arrow"
exporter.export_entities(self.entities, str(output_path))
# Read Arrow file and convert to Pandas
with pa.OSFile(str(output_path), 'rb') as source:
with ipc.open_file(source) as reader:
table = reader.read_all()
df = table.to_pandas()
# Verify DataFrame
self.assertIsInstance(df, pd.DataFrame)
self.assertEqual(len(df), 2)
self.assertEqual(df['id'].tolist(), ['e1', 'e2'])
except ImportError:
self.skipTest("Pandas not installed")
def test_invalid_data_type(self):
"""Test export with invalid data type."""
exporter = ArrowExporter()
output_path = Path(self.test_dir) / "invalid.arrow"
# Test with string instead of list/dict
with self.assertRaises(ValidationError):
exporter.export("invalid_data", str(output_path))
def test_confidence_conversion(self):
"""Test confidence value conversion to float."""
exporter = ArrowExporter()
output_path = Path(self.test_dir) / "entities_confidence.arrow"
entities_varied_confidence = [
{"id": "e1", "text": "Entity 1", "confidence": "0.95"}, # String
{"id": "e2", "text": "Entity 2", "confidence": 0.88}, # Float
{"id": "e3", "text": "Entity 3", "confidence": None}, # None
]
exporter.export_entities(entities_varied_confidence, str(output_path))
# Read and verify confidence values
with pa.OSFile(str(output_path), 'rb') as source:
with ipc.open_file(source) as reader:
table = reader.read_all()
confidences = table.column('confidence').to_pylist()
# First should be converted to float, third should be None
self.assertIsInstance(confidences[0], float)
self.assertEqual(confidences[1], 0.88)
self.assertIsNone(confidences[2])
def test_offset_conversion(self):
"""Test start/end offset conversion to int."""
exporter = ArrowExporter()
output_path = Path(self.test_dir) / "entities_offsets.arrow"
entities_varied_offsets = [
{"id": "e1", "text": "Entity 1", "start": "10", "end": "20"}, # Strings
{"id": "e2", "text": "Entity 2", "start": 30, "end": 40}, # Ints
{"id": "e3", "text": "Entity 3", "start": None, "end": None}, # None
]
exporter.export_entities(entities_varied_offsets, str(output_path))
# Read and verify offset values
with pa.OSFile(str(output_path), 'rb') as source:
with ipc.open_file(source) as reader:
table = reader.read_all()
starts = table.column('start').to_pylist()
ends = table.column('end').to_pylist()
# First should be converted to int
self.assertEqual(starts[0], 10)
self.assertEqual(ends[0], 20)
self.assertEqual(starts[1], 30)
self.assertEqual(ends[1], 40)
self.assertIsNone(starts[2])
self.assertIsNone(ends[2])
def test_dict_export(self):
"""Test export with dictionary containing multiple lists."""
exporter = ArrowExporter()
base_path = Path(self.test_dir) / "dict_export"
data_dict = {
"entities": self.entities,
"relationships": self.relationships
}
exporter.export(data_dict, str(base_path))
# Verify both files created
entities_path = Path(self.test_dir) / "dict_export_entities.arrow"
relationships_path = Path(self.test_dir) / "dict_export_relationships.arrow"
self.assertTrue(entities_path.exists())
self.assertTrue(relationships_path.exists())
def test_progress_tracking(self):
"""Test progress tracker integration."""
exporter = ArrowExporter()
output_path = Path(self.test_dir) / "entities_progress.arrow"
# Progress tracker should be enabled
self.assertTrue(exporter.progress_tracker.enabled)
# Export should complete successfully
exporter.export_entities(self.entities, str(output_path))
self.assertTrue(output_path.exists())
def test_non_dict_entity_skipping(self):
"""Test skipping non-dictionary entities."""
exporter = ArrowExporter()
output_path = Path(self.test_dir) / "entities_mixed.arrow"
mixed_entities = [
{"id": "e1", "text": "Entity 1", "type": "TYPE1"},
"invalid_entity", # Should be skipped
{"id": "e2", "text": "Entity 2", "type": "TYPE2"},
]
exporter.export_entities(mixed_entities, str(output_path))
# Read and verify only valid entities exported
with pa.OSFile(str(output_path), 'rb') as source:
with ipc.open_file(source) as reader:
table = reader.read_all()
self.assertEqual(table.num_rows, 2)
def test_non_dict_relationship_skipping(self):
"""Test skipping non-dictionary relationships."""
exporter = ArrowExporter()
output_path = Path(self.test_dir) / "rels_mixed.arrow"
mixed_rels = [
{"id": "r1", "source_id": "e1", "target_id": "e2", "type": "TYPE1"},
None, # Should be skipped
{"id": "r2", "source_id": "e2", "target_id": "e3", "type": "TYPE2"},
]
exporter.export_relationships(mixed_rels, str(output_path))
# Read and verify only valid relationships exported
with pa.OSFile(str(output_path), 'rb') as source:
with ipc.open_file(source) as reader:
table = reader.read_all()
self.assertEqual(table.num_rows, 2)
class TestArrowExporterIntegration(unittest.TestCase):
"""Integration tests for Arrow exporter with export methods."""
def setUp(self):
"""Set up test fixtures."""
self.test_dir = tempfile.mkdtemp()
self.entities = [
{"id": "e1", "text": "Entity 1", "type": "PERSON"},
{"id": "e2", "text": "Entity 2", "type": "ORG"}
]
def tearDown(self):
"""Clean up test directory."""
shutil.rmtree(self.test_dir)
@unittest.skipIf(not ARROW_AVAILABLE, "pyarrow not installed")
def test_export_arrow_method(self):
"""Test export_arrow convenience function."""
from semantica.export.methods import export_arrow
output_path = Path(self.test_dir) / "entities_method.arrow"
export_arrow(self.entities, str(output_path))
self.assertTrue(output_path.exists())
if __name__ == '__main__':
unittest.main()
+36
View File
@@ -8,6 +8,7 @@ from pathlib import Path
from unittest.mock import MagicMock, patch
from semantica.export import (
ArrowExporter,
JSONExporter,
CSVExporter,
RDFExporter,
@@ -255,6 +256,41 @@ class TestExportModule(unittest.TestCase):
generator.generate_report(self.kg, str(output_path), format="html")
self.assertTrue(output_path.exists())
def test_arrow_exporter(self):
"""Test Arrow exporter basic functionality."""
try:
import pyarrow as pa
import pyarrow.ipc as ipc
exporter = ArrowExporter()
output_path = Path(self.test_dir) / "entities.arrow"
# Test export_entities
exporter.export_entities(self.entities, str(output_path))
self.assertTrue(output_path.exists())
# Verify Arrow file
with pa.OSFile(str(output_path), 'rb') as source:
with ipc.open_file(source) as reader:
table = reader.read_all()
self.assertEqual(table.num_rows, 2)
self.assertIn('id', table.column_names)
self.assertIn('text', table.column_names)
self.assertIn('type', table.column_names)
# Test export_knowledge_graph
base_path = Path(self.test_dir) / "kg_arrow"
exporter.export_knowledge_graph(self.kg, str(base_path))
entities_path = Path(self.test_dir) / "kg_arrow_entities.arrow"
rels_path = Path(self.test_dir) / "kg_arrow_relationships.arrow"
self.assertTrue(entities_path.exists())
self.assertTrue(rels_path.exists())
except ImportError:
print("Skipping Arrow test due to missing pyarrow")
def test_registry(self):
def dummy_method(data, path, **kwargs):
with open(path, 'w') as f: