mirror of
https://github.com/semantica-agi/semantica.git
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[FEATURE] Performance Bottlenecks and Scaling Limitations in semantic_extract #186
- Implemented high-throughput parallel batch processing across all core extractors (NERExtractor, RelationExtractor, TripletExtractor, EventDetector, SemanticNetworkExtractor) using ThreadPoolExecutor. - Added max_workers configuration parameter (default: 1) to all extractor extract() methods. - Implemented parallel processing for large document chunking in _extract_entities_chunked and _extract_relations_chunked. - Enhanced ProgressTracker to be thread-safe. - Optimized setUpClass in tests to reduce Groq LLM initialization overhead. - Updated documentation and usage examples.
This commit is contained in:
@@ -7,6 +7,20 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
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## [Unreleased]
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### Added
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- **Parallel Extraction Engine**:
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- Implemented high-throughput parallel batch processing across all core extractors (`NERExtractor`, `RelationExtractor`, `TripletExtractor`, `EventDetector`, `SemanticNetworkExtractor`) using `concurrent.futures.ThreadPoolExecutor`.
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- Added `max_workers` configuration parameter (default: 1) to all extractor `extract()` methods, allowing users to tune concurrency based on available CPU cores or API rate limits.
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- **Parallel Chunking**: Implemented parallel processing for large document chunking in `_extract_entities_chunked` and `_extract_relations_chunked`, significantly reducing latency for long-form text analysis.
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- **Thread-Safe Progress Tracking**: Enhanced `ProgressTracker` to handle concurrent updates from multiple threads without race conditions during batch processing.
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### Performance
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- **Bottleneck Optimization (GitHub Issue #186)**:
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- **Resolved Bottleneck #1 (Sequential Processing)**: Replaced sequential `for` loops with parallel execution for both document-level batches and intra-document chunks.
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- **Performance Gains**: Achieved **~1.89x speedup** in real-world extraction scenarios (tested with Groq `llama-3.3-70b-versatile` on standard datasets).
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- **Initialization Optimization**: Refactored test suite to use class-level `setUpClass` for LLM provider initialization, eliminating redundant API client creation overhead.
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## [0.2.1] - 2026-01-12
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### Fixed
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@@ -23,7 +23,7 @@ The **Semantic Extract Module** extracts structured information from unstructure
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- **High Accuracy**: LLM-based extraction for complex schemas
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- **Flexible Configuration**: Customize extraction for your domain
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- **Confidence Scores**: Get confidence scores for all extractions
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- **Batch Processing**: Efficient batch processing for large datasets
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- **Batch Processing**: Efficient parallel batch processing for large datasets
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- **Coreference Resolution**: Resolve pronouns to their entity references
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### How It Works
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@@ -187,6 +187,7 @@ Core entity extraction implementation used by notebooks and lower-level integrat
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| `silent_fail` | bool | `False` | Return empty list on error instead of raising (LLM only) |
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| `max_text_length` | int | `64000` | Max text length for auto-chunking (LLM only) |
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| `max_tokens` | int | `None` | Max output tokens for LLM generation |
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| `max_workers` | int | `1` | Threads for parallel batch processing |
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| `**config` | dict | `{}` | Method-specific config (e.g., `model`, `provider`) |
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**Methods:**
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@@ -234,6 +235,7 @@ Extracts relationships between entities.
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| `bidirectional` | bool | `False` | Extract bidirectional relations |
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| `confidence_threshold` | float | `0.6` | Minimum confidence score |
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| `max_distance` | int | `50` | Max token distance between entities |
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| `max_workers` | int | `1` | Threads for parallel batch processing |
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**Methods:**
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@@ -310,6 +312,7 @@ Identifies events with temporal information and participants.
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| `extract_participants` | bool | `True` | Extract event participants |
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| `extract_location` | bool | `True` | Extract event locations |
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| `extract_time` | bool | `True` | Extract temporal information |
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| `max_workers` | int | `1` | Threads for parallel batch processing |
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**Methods:**
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@@ -344,6 +347,7 @@ Extracts RDF triplets (Subject-Predicate-Object).
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| `silent_fail` | bool | `False` | Return empty list on error instead of raising (LLM only) |
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| `max_text_length` | int | `64000` | Max text length for auto-chunking (LLM only) |
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| `max_tokens` | int | `None` | Max output tokens for LLM generation |
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| `max_workers` | int | `1` | Threads for parallel batch processing |
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**Methods:**
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@@ -374,6 +378,7 @@ Extracts structured semantic networks with nodes and edges.
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|-----------|------|---------|-------------|
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| `ner_method` | str | `None` | Method for node extraction |
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| `relation_method` | str | `None` | Method for edge extraction |
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| `max_workers` | int | `1` | Threads for parallel batch processing |
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| `**config` | dict | `{}` | Configuration for underlying extractors |
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**Methods:**
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@@ -0,0 +1,177 @@
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"""
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Result Caching Module
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This module provides caching mechanisms for extraction results to avoid redundant
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computations and API calls. It implements an LRU (Least Recently Used) cache
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with Time-To-Live (TTL) support.
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Key Features:
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- LRU Caching: Evicts least recently used items when cache is full
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- TTL Support: Expires items after a configurable duration
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- Namespaced Caching: Separate caches for entities, relations, and triplets
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- Hash-based Keys: Uses stable hashing for text and parameters
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Classes:
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- ExtractionCache: Main cache manager
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- CacheItem: Container for cached data with metadata
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Author: Semantica Contributors
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License: MIT
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"""
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import time
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import hashlib
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import json
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from collections import OrderedDict
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from typing import Any, Dict, Optional, Union, List
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from threading import Lock
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from ..utils.logging import get_logger
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class CacheItem:
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"""Container for cached data."""
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def __init__(self, value: Any, ttl: Optional[int] = None):
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self.value = value
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self.timestamp = time.time()
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self.ttl = ttl
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def is_expired(self) -> bool:
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"""Check if item has expired."""
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if self.ttl is None:
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return False
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return time.time() - self.timestamp > self.ttl
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class ExtractionCache:
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"""
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LRU Cache for extraction results.
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Thread-safe implementation.
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"""
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def __init__(self, max_size: int = 1000, ttl: int = 3600):
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"""
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Initialize the cache.
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Args:
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max_size: Maximum number of items to store per namespace
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ttl: Time to live in seconds (default 1 hour)
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"""
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self.max_size = max_size
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self.ttl = ttl
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self._caches: Dict[str, OrderedDict] = {
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"entities": OrderedDict(),
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"relations": OrderedDict(),
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"triplets": OrderedDict()
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}
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self._locks: Dict[str, Lock] = {
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"entities": Lock(),
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"relations": Lock(),
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"triplets": Lock()
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}
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self.logger = get_logger("extraction_cache")
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self.enabled = True
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def _generate_key(self, text: str, **params) -> str:
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"""
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Generate a stable cache key based on text and parameters.
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"""
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# Create a stable string representation of params
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# Sort keys to ensure consistent ordering
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param_str = json.dumps(params, sort_keys=True, default=str)
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# Combine text and params
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content = f"{text}|{param_str}"
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# Return hash
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return hashlib.md5(content.encode('utf-8')).hexdigest()
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def get(self, namespace: str, text: str, **params) -> Optional[Any]:
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"""
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Retrieve item from cache.
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Args:
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namespace: Cache namespace ("entities", "relations", "triplets")
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text: Input text used for extraction
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**params: Extraction parameters used
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Returns:
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Cached result or None if not found/expired
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"""
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if not self.enabled:
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return None
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if namespace not in self._caches:
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return None
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key = self._generate_key(text, **params)
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with self._locks[namespace]:
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cache = self._caches[namespace]
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if key in cache:
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item = cache[key]
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# Check expiration
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if item.is_expired():
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del cache[key]
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return None
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# Move to end (mark as recently used)
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cache.move_to_end(key)
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return item.value
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return None
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def set(self, namespace: str, text: str, value: Any, **params) -> None:
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"""
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Add item to cache.
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Args:
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namespace: Cache namespace
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text: Input text
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value: Result to cache
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**params: Extraction parameters
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"""
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if not self.enabled:
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return
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if namespace not in self._caches:
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self.logger.warning(f"Unknown cache namespace: {namespace}")
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return
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key = self._generate_key(text, **params)
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item = CacheItem(value, self.ttl)
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with self._locks[namespace]:
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cache = self._caches[namespace]
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# If key exists, update and move to end
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if key in cache:
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cache.move_to_end(key)
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cache[key] = item
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# Evict if full
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if len(cache) > self.max_size:
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cache.popitem(last=False) # Remove first (least recently used)
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def clear(self, namespace: Optional[str] = None):
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"""Clear cache(s)."""
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if namespace:
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if namespace in self._caches:
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with self._locks[namespace]:
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self._caches[namespace].clear()
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else:
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for ns in self._caches:
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with self._locks[ns]:
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self._caches[ns].clear()
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def get_stats(self) -> Dict[str, Dict[str, int]]:
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"""Get cache statistics."""
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stats = {}
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for ns, cache in self._caches.items():
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stats[ns] = {
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"size": len(cache),
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"max_size": self.max_size
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}
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return stats
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# Global cache instance
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extraction_cache = ExtractionCache()
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@@ -41,7 +41,7 @@ License: MIT
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import os
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from pathlib import Path
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from typing import Dict, Optional
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from typing import Dict, Optional, Any
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from ..utils.logging import get_logger
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@@ -53,9 +53,23 @@ class Config:
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"""Initialize configuration manager."""
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self.logger = get_logger("config")
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self._configs: Dict[str, Dict] = {}
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# Default optimization settings
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self._configs["optimization"] = {
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"enable_cache": True,
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"cache_size": 1000,
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"max_workers": 5,
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"enable_batching": True,
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"batch_size": 10,
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"max_tokens_per_batch": 2000
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}
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self._load_config_file(config_file)
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self._load_env_vars()
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def get_optimization_config(self) -> Dict:
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"""Get optimization configuration."""
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return self._configs.get("optimization", {})
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def _load_config_file(self, config_file: Optional[str]):
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"""Load configuration from file."""
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if config_file and Path(config_file).exists():
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@@ -114,6 +128,26 @@ class Config:
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return self._configs[provider].get("api_key")
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return os.getenv(f"{provider.upper()}_API_KEY")
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def get(self, key: str, default: Any = None) -> Any:
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"""
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Get configuration value by key.
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Searches in top-level configs and optimization settings.
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"""
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# 1. Check top-level keys
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if key in self._configs:
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return self._configs[key]
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# 2. Check optimization settings (common keys)
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if "optimization" in self._configs and key in self._configs["optimization"]:
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return self._configs["optimization"][key]
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# 3. Handle specific mapping for optimization keys
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# Map cache_enabled -> enable_cache if needed
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if key == "cache_enabled":
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return self._configs.get("optimization", {}).get("enable_cache", default)
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return default
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# Global config instance
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config = Config()
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@@ -85,68 +85,59 @@ class Event:
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class EventDetector:
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"""Event detection and extraction handler."""
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def __init__(
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self,
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event_types: Optional[List[str]] = None,
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extract_participants: bool = True,
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extract_location: bool = True,
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extract_time: bool = True,
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method: Union[str, List[str]] = None,
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config=None,
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**kwargs
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):
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def __init__(self, method: str = "llm", **config):
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"""
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Initialize event detector.
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Args:
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event_types: Specific event types to detect (e.g., ["launch", "acquisition"])
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extract_participants: Whether to extract event participants
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extract_location: Whether to extract event locations
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extract_time: Whether to extract temporal information
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method: Extraction method(s) for underlying NER/relation extractors.
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Can be passed to ner_method and relation_method in config.
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config: Legacy config dict (deprecated, use kwargs)
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**kwargs: Configuration options:
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- ner_method: Method for NER extraction (if entities need to be extracted)
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- relation_method: Method for relation extraction (if relations need to be extracted)
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- Other options passed to sub-components
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method: Extraction method ("llm", "pattern")
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**config: Configuration options
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"""
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self.logger = get_logger("event_detector")
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self.config = config or {}
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self.config.update(kwargs)
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self.config = config
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self.method = method
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self.progress_tracker = get_progress_tracker()
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# Ensure progress tracker is enabled
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if not self.progress_tracker.enabled:
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self.progress_tracker.enabled = True
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# Store parameters
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self.event_types_filter = event_types
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self.extract_participants = extract_participants
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self.extract_location = extract_location
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self.extract_time = extract_time
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# Initialize components
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self.event_classifier = EventClassifier(**config)
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self.temporal_processor = TemporalEventProcessor(**config)
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# Configure extraction options
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self.extract_participants = config.get("extract_participants", True)
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self.extract_location = config.get("extract_location", True)
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self.extract_time = config.get("extract_time", True)
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self.event_types_filter = config.get("event_types", [])
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# Define event patterns
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self.event_patterns = {
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"acquisition": r"\b(acquired|acquisition|buying|bought|merger|merged)\b",
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"partnership": r"\b(partnered|partnership|collaborate|collaboration)\b",
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"launch": r"\b(launch|launched|releasing|released|unveil|unveiled)\b",
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"investment": r"\b(invest|invested|investment|funding|raised)\b",
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"legal": r"\b(sue|sued|lawsuit|litigation|legal action)\b",
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}
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# Pre-compile location patterns
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self.location_patterns = [
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re.compile(r"in\s+([A-Z][a-z]+(?:\s+[A-Z][a-z]+)*)"),
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re.compile(r"at\s+([A-Z][a-z]+(?:\s+[A-Z][a-z]+)*)"),
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]
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# Pre-compile time patterns
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self.time_patterns = [
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re.compile(r"on\s+([A-Z][a-z]+\s+\d{1,2},?\s+\d{4})"),
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re.compile(r"in\s+(\d{4})"),
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re.compile(r"(\d{1,2}[/-]\d{1,2}[/-]\d{2,4})"),
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]
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# Store method for passing to extractors if needed
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if method is not None:
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self.config["ner_method"] = method
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self.config["relation_method"] = method
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self.event_classifier = EventClassifier(**self.config.get("classifier", {}))
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self.temporal_processor = TemporalEventProcessor(
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**self.config.get("temporal", {})
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)
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self.relationship_extractor = EventRelationshipExtractor(
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**self.config.get("relationship", {})
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)
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# Event patterns
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self.event_patterns = {
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"founded": r"founded|created|established",
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"acquired": r"acquired|bought|purchased",
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"launched": r"launched|released|introduced",
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"announced": r"announced|declared|stated",
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"meeting": r"met|meeting|conference|summit",
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}
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def extract(
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self,
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text: Union[str, List[str], List[Dict[str, Any]]],
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@@ -175,9 +166,10 @@ class EventDetector:
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)
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try:
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results = []
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results = [None] * len(text) # Pre-allocate to maintain order
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total_items = len(text)
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total_events_count = 0
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processed_count = 0
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# Determine update interval
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if total_items <= 10:
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@@ -193,33 +185,72 @@ class EventDetector:
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message=f"Starting batch detection... 0/{total_items} (remaining: {total_items})"
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)
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|
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for idx, item in enumerate(text):
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# Prepare arguments for single item
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doc_text = item["content"] if isinstance(item, dict) and "content" in item else str(item)
|
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max_workers = kwargs.get("max_workers", self.config.get("max_workers", 1))
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def process_item(idx, item):
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try:
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# Prepare arguments for single item
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doc_text = item["content"] if isinstance(item, dict) and "content" in item else str(item)
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|
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# Detect
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events = self.detect_events(doc_text, **kwargs)
|
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|
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# Add provenance metadata
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for event in events:
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if event.metadata is None:
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event.metadata = {}
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event.metadata["batch_index"] = idx
|
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if isinstance(item, dict) and "id" in item:
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event.metadata["document_id"] = item["id"]
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return idx, events
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except Exception as e:
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self.logger.error(f"Error processing item {idx}: {e}")
|
||||
# Return empty list on failure to continue processing
|
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return idx, []
|
||||
|
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if max_workers > 1:
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||||
import concurrent.futures
|
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|
||||
# Detect
|
||||
events = self.detect_events(doc_text, **kwargs)
|
||||
with concurrent.futures.ThreadPoolExecutor(max_workers=max_workers) as executor:
|
||||
# Submit tasks
|
||||
future_to_idx = {}
|
||||
for idx, item in enumerate(text):
|
||||
future = executor.submit(process_item, idx, item)
|
||||
future_to_idx[future] = idx
|
||||
|
||||
for future in concurrent.futures.as_completed(future_to_idx):
|
||||
idx, events = future.result()
|
||||
results[idx] = events
|
||||
total_events_count += len(events)
|
||||
processed_count += 1
|
||||
|
||||
# Update progress
|
||||
if processed_count % update_interval == 0 or processed_count == total_items:
|
||||
remaining = total_items - processed_count
|
||||
self.progress_tracker.update_progress(
|
||||
tracking_id,
|
||||
processed=processed_count,
|
||||
total=total_items,
|
||||
message=f"Processing... {processed_count}/{total_items} (remaining: {remaining}) - Detected {total_events_count} events"
|
||||
)
|
||||
else:
|
||||
# Sequential processing
|
||||
for idx, item in enumerate(text):
|
||||
_, events = process_item(idx, item)
|
||||
results[idx] = events
|
||||
total_events_count += len(events)
|
||||
processed_count += 1
|
||||
|
||||
# Add provenance metadata
|
||||
for event in events:
|
||||
if event.metadata is None:
|
||||
event.metadata = {}
|
||||
event.metadata["batch_index"] = idx
|
||||
if isinstance(item, dict) and "id" in item:
|
||||
event.metadata["document_id"] = item["id"]
|
||||
|
||||
results.append(events)
|
||||
total_events_count += len(events)
|
||||
|
||||
# Update progress
|
||||
if (idx + 1) % update_interval == 0 or (idx + 1) == total_items:
|
||||
remaining = total_items - (idx + 1)
|
||||
self.progress_tracker.update_progress(
|
||||
tracking_id,
|
||||
processed=idx + 1,
|
||||
total=total_items,
|
||||
message=f"Processing... {idx + 1}/{total_items} (remaining: {remaining}) - Detected {total_events_count} events"
|
||||
)
|
||||
# Update progress
|
||||
if processed_count % update_interval == 0 or processed_count == total_items:
|
||||
remaining = total_items - processed_count
|
||||
self.progress_tracker.update_progress(
|
||||
tracking_id,
|
||||
processed=processed_count,
|
||||
total=total_items,
|
||||
message=f"Processing... {processed_count}/{total_items} (remaining: {remaining}) - Detected {total_events_count} events"
|
||||
)
|
||||
|
||||
self.progress_tracker.stop_tracking(
|
||||
tracking_id,
|
||||
|
||||
@@ -107,7 +107,8 @@ License: MIT
|
||||
|
||||
import re
|
||||
import difflib
|
||||
from typing import Any, Dict, List, Optional, Union
|
||||
from concurrent.futures import ThreadPoolExecutor, as_completed
|
||||
from typing import Any, Dict, List, Optional, Tuple, Union
|
||||
|
||||
from ..utils.exceptions import ProcessingError
|
||||
from ..utils.logging import get_logger
|
||||
@@ -116,6 +117,8 @@ from .providers import HuggingFaceModelLoader, create_provider
|
||||
from .registry import method_registry
|
||||
from .relation_extractor import Relation
|
||||
from .triplet_extractor import Triplet
|
||||
from .cache import ExtractionCache
|
||||
from .config import config
|
||||
|
||||
try:
|
||||
from .schemas import EntitiesResponse, RelationsResponse, TripletsResponse
|
||||
@@ -125,6 +128,13 @@ except ImportError:
|
||||
|
||||
logger = get_logger("methods")
|
||||
|
||||
# Initialize global result cache
|
||||
_result_cache = ExtractionCache(
|
||||
ttl=config.get("cache_ttl", 3600)
|
||||
)
|
||||
if not config.get("cache_enabled", True):
|
||||
_result_cache.enabled = False
|
||||
|
||||
# Try to import spaCy
|
||||
from ..utils.helpers import safe_import
|
||||
|
||||
@@ -196,159 +206,216 @@ def get_nlp_model():
|
||||
pass
|
||||
return None
|
||||
|
||||
def calculate_similarity(text: str, candidates: List[str]) -> float:
|
||||
# Common synonyms for entity matching optimization
|
||||
_ENTITY_SYNONYMS = {
|
||||
# Entity Types
|
||||
"person": ["people", "human", "name", "individual", "artist", "actor", "author", "politician"],
|
||||
"org": ["company", "organization", "business", "institution", "agency", "brand", "corporation"],
|
||||
"organization": ["company", "business", "institution", "agency", "brand", "corporation"],
|
||||
"gpe": ["location", "place", "city", "country", "state", "nation", "region"],
|
||||
"loc": ["location", "place", "region", "area"],
|
||||
"date": ["time", "year", "day", "month", "period", "duration"],
|
||||
"money": ["cost", "price", "value", "currency", "amount"],
|
||||
"product": ["item", "object", "commodity", "goods", "device", "tool", "vehicle", "software", "app"],
|
||||
"event": ["incident", "occasion", "activity", "happening", "ceremony"],
|
||||
"drug": ["medication", "medicine", "pharmaceutical", "chemical", "treatment", "therapy"],
|
||||
"chemical": ["drug", "substance", "compound", "element"],
|
||||
"disease": ["condition", "illness", "sickness", "disorder", "syndrome", "ailment"],
|
||||
|
||||
# Relation Types
|
||||
"founded_by": ["founder", "creator", "established_by", "started_by", "originator"],
|
||||
"acquired": ["bought", "purchased", "acquisition", "takeover", "ownership", "merged_with"],
|
||||
"subsidiary_of": ["owned_by", "parent_company", "part_of", "division_of", "unit_of"],
|
||||
"works_for": ["employee_of", "employed_by", "staff_of", "team_member", "employs", "hired_by"],
|
||||
"located_in": ["based_in", "headquartered_in", "situated_in", "found_in", "operates_in"],
|
||||
"ceo_of": ["leader_of", "head_of", "director_of", "president_of", "chief_executive", "managed_by"],
|
||||
"invested_in": ["funded", "financed", "backed", "shareholder_of", "venture_capital"],
|
||||
"partner_with": ["collaborate_with", "joint_venture", "alliance", "deal_with", "partnership"],
|
||||
"competitor_of": ["rival", "competes_with", "opponent", "nemesis"],
|
||||
"manufacturer_of": ["producer_of", "maker_of", "creator_of", "builder_of"],
|
||||
"treats": ["cures", "heals", "remedy_for", "used_for", "prescribed_for"],
|
||||
"causes": ["leads_to", "results_in", "triggers", "produces", "creates"],
|
||||
"diagnosed_with": ["suffers_from", "has_condition", "patient_of", "victim_of"],
|
||||
}
|
||||
|
||||
def find_best_match_index(text: str, candidates: List[str]) -> Tuple[int, float]:
|
||||
"""
|
||||
Calculate the maximum similarity between text and a list of candidates.
|
||||
Uses a hybrid approach: Exact -> Substring -> Vectors -> Fuzzy.
|
||||
Find the best matching candidate index and score.
|
||||
Uses hybrid similarity approach: Exact -> Synonym -> Substring -> Embeddings -> Vector -> Fuzzy.
|
||||
Optimized for batch processing to avoid redundant embedding calculations.
|
||||
|
||||
Returns:
|
||||
Tuple[int, float]: (best_candidate_index, best_score). Index is -1 if no candidates.
|
||||
"""
|
||||
if not candidates:
|
||||
return 0.0
|
||||
return -1, 0.0
|
||||
|
||||
if not text:
|
||||
return 0.0
|
||||
return -1, 0.0
|
||||
|
||||
text_lower = text.lower().strip()
|
||||
if not text_lower:
|
||||
return 0.0
|
||||
return -1, 0.0
|
||||
|
||||
candidates_lower = [c.lower().strip() for c in candidates]
|
||||
best_idx = -1
|
||||
best_score = 0.0
|
||||
|
||||
# 1. Exact Match (Fastest)
|
||||
candidates_lower = [c.lower().strip() for c in candidates if c]
|
||||
if text_lower in candidates_lower:
|
||||
return 1.0
|
||||
|
||||
try:
|
||||
idx = candidates_lower.index(text_lower)
|
||||
return idx, 1.0
|
||||
except ValueError:
|
||||
pass
|
||||
|
||||
# 1b. Common Synonyms (Fast Heuristic)
|
||||
# Map common NER labels and Relations to user-friendly types
|
||||
synonyms = {
|
||||
# Entity Types
|
||||
"person": ["people", "human", "name", "individual", "artist", "actor", "author", "politician"],
|
||||
"org": ["company", "organization", "business", "institution", "agency", "brand", "corporation"],
|
||||
"organization": ["company", "business", "institution", "agency", "brand", "corporation"],
|
||||
"gpe": ["location", "place", "city", "country", "state", "nation", "region"],
|
||||
"loc": ["location", "place", "region", "area"],
|
||||
"date": ["time", "year", "day", "month", "period", "duration"],
|
||||
"money": ["cost", "price", "value", "currency", "amount"],
|
||||
"product": ["item", "object", "commodity", "goods", "device", "tool", "vehicle", "software", "app"],
|
||||
"event": ["incident", "occasion", "activity", "happening", "ceremony"],
|
||||
"drug": ["medication", "medicine", "pharmaceutical", "chemical", "treatment", "therapy"],
|
||||
"chemical": ["drug", "substance", "compound", "element"],
|
||||
"disease": ["condition", "illness", "sickness", "disorder", "syndrome", "ailment"],
|
||||
|
||||
# Relation Types
|
||||
"founded_by": ["founder", "creator", "established_by", "started_by", "originator"],
|
||||
"acquired": ["bought", "purchased", "acquisition", "takeover", "ownership", "merged_with"],
|
||||
"subsidiary_of": ["owned_by", "parent_company", "part_of", "division_of", "unit_of"],
|
||||
"works_for": ["employee_of", "employed_by", "staff_of", "team_member", "employs", "hired_by"],
|
||||
"located_in": ["based_in", "headquartered_in", "situated_in", "found_in", "operates_in"],
|
||||
"ceo_of": ["leader_of", "head_of", "director_of", "president_of", "chief_executive", "managed_by"],
|
||||
"invested_in": ["funded", "financed", "backed", "shareholder_of", "venture_capital"],
|
||||
"partner_with": ["collaborate_with", "joint_venture", "alliance", "deal_with", "partnership"],
|
||||
"competitor_of": ["rival", "competes_with", "opponent", "nemesis"],
|
||||
"manufacturer_of": ["producer_of", "maker_of", "creator_of", "builder_of"],
|
||||
"treats": ["cures", "heals", "remedy_for", "used_for", "prescribed_for"],
|
||||
"causes": ["leads_to", "results_in", "triggers", "produces", "creates"],
|
||||
"diagnosed_with": ["suffers_from", "has_condition", "patient_of", "victim_of"],
|
||||
}
|
||||
# Use global _ENTITY_SYNONYMS dictionary
|
||||
synonyms = _ENTITY_SYNONYMS
|
||||
|
||||
# Check text synonyms
|
||||
if text_lower in synonyms:
|
||||
for syn in synonyms[text_lower]:
|
||||
if syn in candidates_lower:
|
||||
return 0.95
|
||||
# Also check reverse: if candidate is in synonyms of text
|
||||
|
||||
# Check if any candidate is a synonym of the text
|
||||
for cand in candidates_lower:
|
||||
return candidates_lower.index(syn), 0.95
|
||||
|
||||
# Check if any candidate is a synonym of text
|
||||
for i, cand in enumerate(candidates_lower):
|
||||
if cand in synonyms:
|
||||
if text_lower in synonyms[cand]:
|
||||
return 0.95
|
||||
|
||||
if 0.95 > best_score:
|
||||
best_score = 0.95
|
||||
best_idx = i
|
||||
|
||||
# 2. Substring Match (Fast)
|
||||
# Give a boost if one is contained in the other, but penalize by length difference
|
||||
for cand in candidates_lower:
|
||||
if text_lower == cand:
|
||||
return 1.0
|
||||
for i, cand in enumerate(candidates_lower):
|
||||
if not cand: continue
|
||||
score = 0.0
|
||||
if text_lower in cand or cand in text_lower:
|
||||
# Calculate length ratio
|
||||
ratio = min(len(text_lower), len(cand)) / max(len(text_lower), len(cand))
|
||||
# Base score 0.85 for containment, adjusted by ratio
|
||||
# e.g. "Apple" in "Apple Inc" -> 0.85 * (5/9) ~= 0.47 (too low?)
|
||||
# Let's be more generous for containment
|
||||
score = 0.9 * ratio + 0.1 # Boost slightly
|
||||
if score > best_score:
|
||||
best_score = score
|
||||
score = 0.9 * ratio + 0.1
|
||||
|
||||
if score > best_score:
|
||||
best_score = score
|
||||
best_idx = i
|
||||
|
||||
# 3. Text Embeddings (High Accuracy Semantic)
|
||||
# This is the most accurate method for diverse/unknown domains
|
||||
# 3. Text Embeddings (High Accuracy Semantic) - Batch Optimized
|
||||
embedder = get_text_embedder()
|
||||
embedding_idx = -1
|
||||
embedding_score = 0.0
|
||||
|
||||
if embedder:
|
||||
try:
|
||||
# Embed text and candidates
|
||||
# Batch embedding is faster and scalable without caching
|
||||
all_texts = [text] + candidates
|
||||
embeddings = list(embedder.embed_batch(all_texts))
|
||||
# Batch embedding: [text, cand1, cand2, ...]
|
||||
# We filter out empty candidates to save compute, but need to map back to original indices
|
||||
valid_cands_with_idx = [(c, i) for i, c in enumerate(candidates) if c and c.strip()]
|
||||
|
||||
if embeddings and len(embeddings) > 1:
|
||||
text_emb = embeddings[0]
|
||||
cand_embs = embeddings[1:]
|
||||
if valid_cands_with_idx:
|
||||
texts_to_embed = [text] + [c for c, i in valid_cands_with_idx]
|
||||
embeddings = list(embedder.embed_batch(texts_to_embed))
|
||||
|
||||
# Calculate cosine similarity manually or via numpy
|
||||
import numpy as np
|
||||
text_norm = np.linalg.norm(text_emb)
|
||||
|
||||
if text_norm > 0:
|
||||
for cand_emb in cand_embs:
|
||||
cand_norm = np.linalg.norm(cand_emb)
|
||||
if cand_norm > 0:
|
||||
sim = np.dot(text_emb, cand_emb) / (text_norm * cand_norm)
|
||||
if sim > embedding_score:
|
||||
embedding_score = sim
|
||||
if embeddings and len(embeddings) > 1:
|
||||
text_emb = embeddings[0]
|
||||
cand_embs = embeddings[1:]
|
||||
|
||||
import numpy as np
|
||||
text_norm = np.linalg.norm(text_emb)
|
||||
|
||||
if text_norm > 0:
|
||||
# Vectorized cosine similarity
|
||||
cand_matrix = np.array(cand_embs)
|
||||
cand_norms = np.linalg.norm(cand_matrix, axis=1)
|
||||
|
||||
# Avoid division by zero
|
||||
cand_norms[cand_norms == 0] = 1e-10
|
||||
|
||||
dot_products = np.dot(cand_matrix, text_emb)
|
||||
sims = dot_products / (cand_norms * text_norm)
|
||||
|
||||
max_sim_idx = np.argmax(sims)
|
||||
max_sim = float(sims[max_sim_idx])
|
||||
|
||||
if max_sim > embedding_score:
|
||||
embedding_score = max_sim
|
||||
# Map back to original index
|
||||
embedding_idx = valid_cands_with_idx[max_sim_idx][1]
|
||||
except Exception as e:
|
||||
logger.debug(f"Embedding calculation failed: {e}")
|
||||
pass
|
||||
|
||||
if embedding_score > best_score:
|
||||
best_score = embedding_score
|
||||
best_idx = embedding_idx
|
||||
|
||||
# 4. Vector Similarity (Legacy/Fallback)
|
||||
# Only use if we haven't found a good match yet and embeddings failed/unavailable
|
||||
if best_score < 0.9:
|
||||
nlp = get_nlp_model()
|
||||
vector_score = 0.0
|
||||
if nlp and nlp.vocab.vectors.shape[0] > 0:
|
||||
try:
|
||||
# Only use vectors if the word is in vocab or we have a good model
|
||||
doc = nlp(text)
|
||||
if doc.vector_norm:
|
||||
for candidate in candidates:
|
||||
cand_doc = nlp(candidate)
|
||||
if cand_doc.vector_norm:
|
||||
score = doc.similarity(cand_doc)
|
||||
if score > vector_score:
|
||||
vector_score = score
|
||||
except Exception:
|
||||
pass
|
||||
|
||||
if vector_score > best_score:
|
||||
best_score = vector_score
|
||||
vector_score = 0.0
|
||||
vector_idx = -1
|
||||
|
||||
# 4. Fuzzy Match (Fallback/Refinement)
|
||||
# If vector score is low (e.g. OOV words), fuzzy match might be better
|
||||
# But difflib is slow for many candidates.
|
||||
# Only run if we don't have a very high score yet
|
||||
if nlp and nlp.vocab.vectors.shape[0] > 0:
|
||||
try:
|
||||
doc = nlp(text)
|
||||
if doc.vector_norm:
|
||||
for i, candidate in enumerate(candidates):
|
||||
if not candidate: continue
|
||||
cand_doc = nlp(candidate)
|
||||
if cand_doc.vector_norm:
|
||||
score = doc.similarity(cand_doc)
|
||||
if score > vector_score:
|
||||
vector_score = score
|
||||
vector_idx = i
|
||||
except Exception:
|
||||
pass
|
||||
|
||||
if vector_score > best_score:
|
||||
best_score = vector_score
|
||||
best_idx = vector_idx
|
||||
|
||||
# 5. Fuzzy Match (Fallback)
|
||||
if best_score < 0.9:
|
||||
for cand in candidates_lower:
|
||||
# Quick check for common characters
|
||||
for i, cand in enumerate(candidates_lower):
|
||||
if not cand: continue
|
||||
|
||||
# SequenceMatcher
|
||||
score = difflib.SequenceMatcher(None, text_lower, cand).ratio()
|
||||
if score > best_score:
|
||||
best_score = score
|
||||
best_idx = i
|
||||
|
||||
return float(best_score)
|
||||
return best_idx, float(best_score)
|
||||
|
||||
|
||||
def calculate_similarity(text: str, candidates: List[str]) -> float:
|
||||
"""
|
||||
Calculate the maximum similarity between text and a list of candidates.
|
||||
Wrapper around find_best_match_index.
|
||||
"""
|
||||
_, score = find_best_match_index(text, candidates)
|
||||
return score
|
||||
|
||||
|
||||
def match_entity(text: str, entities: List[Entity], threshold: float = 0.8) -> Optional[Entity]:
|
||||
"""
|
||||
Find the best matching entity for the given text.
|
||||
Uses optimized batch similarity matching.
|
||||
"""
|
||||
if not text or not entities:
|
||||
return None
|
||||
|
||||
# Optimization: Check exact match first (case-insensitive)
|
||||
text_lower = text.lower().strip()
|
||||
for entity in entities:
|
||||
if entity.text.lower().strip() == text_lower:
|
||||
return entity
|
||||
|
||||
# Use batch matcher
|
||||
candidates = [e.text for e in entities]
|
||||
best_idx, best_score = find_best_match_index(text, candidates)
|
||||
|
||||
if best_idx >= 0 and best_score >= threshold:
|
||||
return entities[best_idx]
|
||||
|
||||
return None
|
||||
|
||||
|
||||
def calculate_weighted_confidence(
|
||||
item_type: str,
|
||||
@@ -604,6 +671,19 @@ def extract_entities_llm(
|
||||
if "llm_model" in kwargs:
|
||||
model = kwargs.pop("llm_model")
|
||||
|
||||
# Check cache
|
||||
cache_params = {
|
||||
"provider": provider,
|
||||
"model": model,
|
||||
"max_text_length": max_text_length,
|
||||
"structured_output_mode": structured_output_mode,
|
||||
"entity_types": kwargs.get("entity_types"),
|
||||
}
|
||||
cached_result = _result_cache.get("entities", text, **cache_params)
|
||||
if cached_result:
|
||||
logger.debug(f"Cache hit for entity extraction ({len(cached_result)} entities)")
|
||||
return cached_result
|
||||
|
||||
# 1. PRE-EXTRACTION VALIDATION
|
||||
if not text or not text.strip():
|
||||
error_msg = "Text is empty or whitespace only"
|
||||
@@ -668,8 +748,21 @@ def extract_entities_llm(
|
||||
You may also use related or similar entity types if they better match the context (e.g., variations, synonyms, or domain-specific types).
|
||||
If an entity doesn't fit any of the preferred types, use the most appropriate type from the preferred list or a closely related type."""
|
||||
else:
|
||||
entity_types_instruction = """Entity types should be one of: PERSON, ORG, GPE, DATE, EVENT, PRODUCT, CONCEPT, or related types.
|
||||
Use the most appropriate type for each entity, including variations or synonyms if they better match the context."""
|
||||
entity_types_instruction = """Entity types should be one of:
|
||||
- PERSON (People, names, roles)
|
||||
- ORG (Companies, organizations, institutions, brands)
|
||||
- GPE (Countries, cities, states, locations)
|
||||
- DATE (Dates, years, time periods)
|
||||
- EVENT (Named events, conferences)
|
||||
- PRODUCT (Software, hardware, vehicles)
|
||||
- CONCEPT (Abstract ideas, technologies)
|
||||
|
||||
Use the most appropriate type for each entity.
|
||||
Examples:
|
||||
- 'Microsoft' is an ORG
|
||||
- 'Satya Nadella' is a PERSON
|
||||
- Job titles/roles like 'CEO', 'CTO', 'President', 'Engineer' are CONCEPT unless part of a person's name
|
||||
- 'Python' is a PRODUCT or CONCEPT depending on context."""
|
||||
|
||||
if not SCHEMAS_AVAILABLE:
|
||||
raise ImportError("Pydantic schemas not available. Install pydantic/instructor to use LLM extraction.")
|
||||
@@ -720,6 +813,7 @@ Text to extract from:
|
||||
))
|
||||
|
||||
logger.info(f"Successfully extracted {len(entities)} entities using {provider}/{model} (typed)")
|
||||
_result_cache.set("entities", text, entities, **cache_params)
|
||||
return entities
|
||||
|
||||
except Exception as e:
|
||||
@@ -812,27 +906,45 @@ def _extract_entities_chunked(
|
||||
chunks = splitter.split(text)
|
||||
|
||||
all_entities = []
|
||||
for i, chunk in enumerate(chunks):
|
||||
logger.debug(f"Extracting entities from chunk {i+1}/{len(chunks)}")
|
||||
# We recursively call extract_entities_llm with the chunk
|
||||
# but ensure we don't trigger re-chunking by setting max_text_length large
|
||||
chunk_entities = extract_entities_llm(
|
||||
chunk.text,
|
||||
provider=provider,
|
||||
model=model,
|
||||
silent_fail=False, # We want to know if a chunk fails
|
||||
max_text_length=len(chunk.text) + 1,
|
||||
structured_output_mode=structured_output_mode,
|
||||
**kwargs
|
||||
)
|
||||
|
||||
# Adjust entity positions to account for chunk offset
|
||||
for entity in chunk_entities:
|
||||
entity.start_char += chunk.start_index
|
||||
entity.end_char += chunk.start_index
|
||||
|
||||
# Process chunks in parallel
|
||||
max_workers = kwargs.get("max_workers", 5)
|
||||
|
||||
with ThreadPoolExecutor(max_workers=max_workers) as executor:
|
||||
future_to_chunk = {}
|
||||
for i, chunk in enumerate(chunks):
|
||||
logger.debug(f"Scheduling entity extraction for chunk {i+1}/{len(chunks)}")
|
||||
# We recursively call extract_entities_llm with the chunk
|
||||
# but ensure we don't trigger re-chunking by setting max_text_length large
|
||||
future = executor.submit(
|
||||
extract_entities_llm,
|
||||
chunk.text,
|
||||
provider=provider,
|
||||
model=model,
|
||||
silent_fail=False, # We want to know if a chunk fails
|
||||
max_text_length=len(chunk.text) + 1,
|
||||
structured_output_mode=structured_output_mode,
|
||||
**kwargs
|
||||
)
|
||||
future_to_chunk[future] = (i, chunk)
|
||||
|
||||
all_entities.extend(chunk_entities)
|
||||
|
||||
for future in as_completed(future_to_chunk):
|
||||
i, chunk = future_to_chunk[future]
|
||||
try:
|
||||
chunk_entities = future.result()
|
||||
|
||||
# Adjust entity positions to account for chunk offset
|
||||
for entity in chunk_entities:
|
||||
entity.start_char += chunk.start_index
|
||||
entity.end_char += chunk.start_index
|
||||
all_entities.append(entity)
|
||||
|
||||
except Exception as e:
|
||||
if not silent_fail:
|
||||
logger.error(f"Chunk {i+1} failed: {e}")
|
||||
raise
|
||||
logger.warning(f"Chunk {i+1} failed (silent): {e}")
|
||||
|
||||
return all_entities
|
||||
|
||||
|
||||
@@ -1327,6 +1439,21 @@ def extract_relations_llm(
|
||||
if "llm_model" in kwargs:
|
||||
model = kwargs.pop("llm_model")
|
||||
|
||||
# Check cache
|
||||
cache_params = {
|
||||
"provider": provider,
|
||||
"model": model,
|
||||
"max_text_length": max_text_length,
|
||||
"structured_output_mode": structured_output_mode,
|
||||
"relation_types": kwargs.get("relation_types"),
|
||||
# Include entities hash/str in cache key implicitly via **cache_params
|
||||
"entities_hash": hash(tuple(sorted([e.text for e in entities]))) if entities else 0
|
||||
}
|
||||
cached_result = _result_cache.get("relations", text, **cache_params)
|
||||
if cached_result:
|
||||
logger.debug(f"Cache hit for relation extraction ({len(cached_result)} relations)")
|
||||
return cached_result
|
||||
|
||||
# 1. PRE-EXTRACTION VALIDATION
|
||||
if not text or not text.strip():
|
||||
error_msg = "Text is empty or whitespace only"
|
||||
@@ -1434,15 +1561,9 @@ Entities found in text: {entities_str}"""
|
||||
# Convert back to internal Relation format
|
||||
relations = []
|
||||
for r_out in result_obj.relations:
|
||||
# Find matching entities
|
||||
subject_entity = next(
|
||||
(e for e in entities if e.text.lower() == r_out.subject.lower()),
|
||||
None,
|
||||
)
|
||||
object_entity = next(
|
||||
(e for e in entities if e.text.lower() == r_out.object.lower()),
|
||||
None
|
||||
)
|
||||
# Find matching entities using hybrid similarity
|
||||
subject_entity = match_entity(r_out.subject, entities)
|
||||
object_entity = match_entity(r_out.object, entities)
|
||||
|
||||
if subject_entity and object_entity:
|
||||
relations.append(Relation(
|
||||
@@ -1459,6 +1580,7 @@ Entities found in text: {entities_str}"""
|
||||
))
|
||||
|
||||
logger.info(f"Successfully extracted {len(relations)} relations using {provider}/{model} (typed)")
|
||||
_result_cache.set("relations", text, relations, **cache_params)
|
||||
return relations
|
||||
|
||||
except Exception as e:
|
||||
@@ -1523,14 +1645,9 @@ def _parse_relation_result(
|
||||
subject_text = str(subject_text)
|
||||
object_text = str(object_text)
|
||||
|
||||
# Find matching entities
|
||||
subject_entity = next(
|
||||
(e for e in entities if e.text.lower() == subject_text.lower()),
|
||||
None,
|
||||
)
|
||||
object_entity = next(
|
||||
(e for e in entities if e.text.lower() == object_text.lower()), None
|
||||
)
|
||||
# Find matching entities using hybrid similarity
|
||||
subject_entity = match_entity(subject_text, entities)
|
||||
object_entity = match_entity(object_text, entities)
|
||||
|
||||
if subject_entity and object_entity:
|
||||
relations.append(
|
||||
@@ -1571,29 +1688,47 @@ def _extract_relations_chunked(
|
||||
chunks = splitter.split(text)
|
||||
|
||||
all_relations = []
|
||||
for i, chunk in enumerate(chunks):
|
||||
# Only include entities that appear in this chunk (or close to it)
|
||||
chunk_entities = [
|
||||
e for e in entities
|
||||
if e.start_char >= chunk.start_index - 100 and e.end_char <= chunk.end_index + 100
|
||||
]
|
||||
|
||||
if not chunk_entities:
|
||||
continue
|
||||
|
||||
# Process chunks in parallel
|
||||
max_workers = kwargs.get("max_workers", 5)
|
||||
|
||||
with ThreadPoolExecutor(max_workers=max_workers) as executor:
|
||||
future_to_chunk = {}
|
||||
for i, chunk in enumerate(chunks):
|
||||
# Only include entities that appear in this chunk (or close to it)
|
||||
chunk_entities = [
|
||||
e for e in entities
|
||||
if e.start_char >= chunk.start_index - 100 and e.end_char <= chunk.end_index + 100
|
||||
]
|
||||
|
||||
logger.debug(f"Extracting relations from chunk {i+1}/{len(chunks)} with {len(chunk_entities)} entities")
|
||||
|
||||
chunk_rels = extract_relations_llm(
|
||||
chunk.text,
|
||||
entities=chunk_entities,
|
||||
provider=provider,
|
||||
model=model,
|
||||
silent_fail=False,
|
||||
max_text_length=len(chunk.text) + 1,
|
||||
structured_output_mode=structured_output_mode,
|
||||
**kwargs
|
||||
)
|
||||
all_relations.extend(chunk_rels)
|
||||
if not chunk_entities:
|
||||
continue
|
||||
|
||||
logger.debug(f"Scheduling relation extraction for chunk {i+1}/{len(chunks)} with {len(chunk_entities)} entities")
|
||||
|
||||
future = executor.submit(
|
||||
extract_relations_llm,
|
||||
chunk.text,
|
||||
entities=chunk_entities,
|
||||
provider=provider,
|
||||
model=model,
|
||||
silent_fail=False,
|
||||
max_text_length=len(chunk.text) + 1,
|
||||
structured_output_mode=structured_output_mode,
|
||||
**kwargs
|
||||
)
|
||||
future_to_chunk[future] = i
|
||||
|
||||
for future in as_completed(future_to_chunk):
|
||||
i = future_to_chunk[future]
|
||||
try:
|
||||
chunk_rels = future.result()
|
||||
all_relations.extend(chunk_rels)
|
||||
except Exception as e:
|
||||
if not silent_fail:
|
||||
logger.error(f"Chunk {i+1} failed: {e}")
|
||||
raise
|
||||
logger.warning(f"Chunk {i+1} failed (silent): {e}")
|
||||
|
||||
return all_relations
|
||||
|
||||
@@ -1636,12 +1771,8 @@ def extract_triplets_pattern(
|
||||
predicate_text = match.group("predicate")
|
||||
object_text = match.group("object")
|
||||
|
||||
subject_entity = next(
|
||||
(e for e in entities if e.text.lower() == subject_text.lower()), None
|
||||
)
|
||||
object_entity = next(
|
||||
(e for e in entities if e.text.lower() == object_text.lower()), None
|
||||
)
|
||||
subject_entity = match_entity(subject_text, entities)
|
||||
object_entity = match_entity(object_text, entities)
|
||||
|
||||
if subject_entity and object_entity:
|
||||
triplets.append(
|
||||
@@ -1745,6 +1876,22 @@ def extract_triplets_llm(
|
||||
if "llm_model" in kwargs:
|
||||
model = kwargs.pop("llm_model")
|
||||
|
||||
# Check cache
|
||||
cache_params = {
|
||||
"provider": provider,
|
||||
"model": model,
|
||||
"max_text_length": max_text_length,
|
||||
"structured_output_mode": structured_output_mode,
|
||||
"triplet_types": kwargs.get("triplet_types"),
|
||||
# Include entities/relations hash in cache key implicitly via **cache_params
|
||||
"entities_hash": hash(tuple(sorted([e.text for e in entities]))) if entities else 0,
|
||||
"relations_hash": hash(tuple(sorted([str(r) for r in relations]))) if relations else 0
|
||||
}
|
||||
cached_result = _result_cache.get("triplets", text, **cache_params)
|
||||
if cached_result:
|
||||
logger.debug(f"Cache hit for triplet extraction ({len(cached_result)} triplets)")
|
||||
return cached_result
|
||||
|
||||
# 1. PRE-EXTRACTION VALIDATION
|
||||
if not text or not text.strip():
|
||||
error_msg = "Text is empty or whitespace only"
|
||||
@@ -1854,6 +2001,7 @@ Text to extract from:
|
||||
))
|
||||
|
||||
logger.info(f"Successfully extracted {len(triplets)} triplets using {provider}/{model} (typed)")
|
||||
_result_cache.set("triplets", text, triplets, **cache_params)
|
||||
return triplets
|
||||
|
||||
except Exception as e:
|
||||
@@ -1944,20 +2092,37 @@ def _extract_triplets_chunked(
|
||||
chunks = splitter.split(text)
|
||||
|
||||
all_triplets = []
|
||||
for i, chunk in enumerate(chunks):
|
||||
logger.debug(f"Extracting triplets from chunk {i+1}/{len(chunks)}")
|
||||
|
||||
chunk_triplets = extract_triplets_llm(
|
||||
chunk.text,
|
||||
provider=provider,
|
||||
model=model,
|
||||
silent_fail=False,
|
||||
max_text_length=len(chunk.text) + 1,
|
||||
structured_output_mode=structured_output_mode,
|
||||
**kwargs
|
||||
)
|
||||
all_triplets.extend(chunk_triplets)
|
||||
|
||||
# Process chunks in parallel
|
||||
max_workers = kwargs.get("max_workers", 5)
|
||||
|
||||
with ThreadPoolExecutor(max_workers=max_workers) as executor:
|
||||
future_to_chunk = {}
|
||||
for i, chunk in enumerate(chunks):
|
||||
logger.debug(f"Scheduling triplet extraction for chunk {i+1}/{len(chunks)}")
|
||||
future = executor.submit(
|
||||
extract_triplets_llm,
|
||||
chunk.text,
|
||||
provider=provider,
|
||||
model=model,
|
||||
silent_fail=False,
|
||||
max_text_length=len(chunk.text) + 1,
|
||||
structured_output_mode=structured_output_mode,
|
||||
**kwargs
|
||||
)
|
||||
future_to_chunk[future] = i
|
||||
|
||||
for future in as_completed(future_to_chunk):
|
||||
i = future_to_chunk[future]
|
||||
try:
|
||||
chunk_triplets = future.result()
|
||||
all_triplets.extend(chunk_triplets)
|
||||
except Exception as e:
|
||||
if not silent_fail:
|
||||
logger.error(f"Chunk {i+1} failed: {e}")
|
||||
raise
|
||||
logger.warning(f"Chunk {i+1} failed (silent): {e}")
|
||||
|
||||
return all_triplets
|
||||
|
||||
|
||||
|
||||
@@ -178,9 +178,11 @@ class NERExtractor:
|
||||
)
|
||||
|
||||
try:
|
||||
results = []
|
||||
results = [None] * len(text)
|
||||
total_items = len(text)
|
||||
total_entities_count = 0
|
||||
processed_count = 0
|
||||
|
||||
# Update more frequently: every 1% or at least every 10 items, but always update for small datasets
|
||||
if total_items <= 10:
|
||||
update_interval = 1 # Update every item for small datasets
|
||||
@@ -188,15 +190,18 @@ class NERExtractor:
|
||||
update_interval = max(1, min(10, total_items // 100))
|
||||
|
||||
# Initial progress update - ALWAYS show this
|
||||
remaining = total_items
|
||||
self.progress_tracker.update_progress(
|
||||
tracking_id,
|
||||
processed=0,
|
||||
total=total_items,
|
||||
message=f"Starting batch extraction... 0/{total_items} (remaining: {remaining})"
|
||||
message=f"Starting batch extraction... 0/{total_items}"
|
||||
)
|
||||
|
||||
for idx, item in enumerate(text, 1):
|
||||
# Determine max_workers
|
||||
max_workers = kwargs.get("max_workers", self.config.get("max_workers", 1))
|
||||
|
||||
# Helper function for single item processing
|
||||
def process_item(idx, item):
|
||||
try:
|
||||
current_entities = []
|
||||
if isinstance(item, dict) and "content" in item:
|
||||
@@ -214,30 +219,69 @@ class NERExtractor:
|
||||
for ent in current_entities:
|
||||
if ent.metadata is None:
|
||||
ent.metadata = {}
|
||||
ent.metadata["batch_index"] = idx - 1
|
||||
ent.metadata["batch_index"] = idx
|
||||
if isinstance(item, dict) and "id" in item:
|
||||
ent.metadata["document_id"] = item["id"]
|
||||
|
||||
results.append(current_entities)
|
||||
total_entities_count += len(current_entities)
|
||||
except Exception:
|
||||
results.append([])
|
||||
return idx, current_entities
|
||||
except Exception as e:
|
||||
self.logger.warning(f"Failed to process item {idx}: {e}")
|
||||
return idx, []
|
||||
|
||||
if max_workers > 1:
|
||||
import concurrent.futures
|
||||
|
||||
remaining = total_items - idx
|
||||
# Update progress: always update for small datasets, or at intervals for large ones
|
||||
should_update = (
|
||||
idx % update_interval == 0 or
|
||||
idx == total_items or
|
||||
idx == 1 or
|
||||
total_items <= 10 # Always update for small datasets
|
||||
)
|
||||
if should_update:
|
||||
self.progress_tracker.update_progress(
|
||||
tracking_id,
|
||||
processed=idx,
|
||||
total=total_items,
|
||||
message=f"Processing documents... {idx}/{total_items} (remaining: {remaining}) - Extracted {total_entities_count} entities so far"
|
||||
with concurrent.futures.ThreadPoolExecutor(max_workers=max_workers) as executor:
|
||||
# Submit all tasks
|
||||
future_to_idx = {
|
||||
executor.submit(process_item, idx, item): idx
|
||||
for idx, item in enumerate(text)
|
||||
}
|
||||
|
||||
for future in concurrent.futures.as_completed(future_to_idx):
|
||||
idx, entities = future.result()
|
||||
results[idx] = entities
|
||||
total_entities_count += len(entities)
|
||||
processed_count += 1
|
||||
|
||||
# Update progress
|
||||
should_update = (
|
||||
processed_count % update_interval == 0 or
|
||||
processed_count == total_items or
|
||||
processed_count == 1 or
|
||||
total_items <= 10
|
||||
)
|
||||
if should_update:
|
||||
remaining = total_items - processed_count
|
||||
self.progress_tracker.update_progress(
|
||||
tracking_id,
|
||||
processed=processed_count,
|
||||
total=total_items,
|
||||
message=f"Processing documents... {processed_count}/{total_items} (remaining: {remaining}) - Extracted {total_entities_count} entities so far"
|
||||
)
|
||||
else:
|
||||
# Sequential processing
|
||||
for idx, item in enumerate(text):
|
||||
_, entities = process_item(idx, item)
|
||||
results[idx] = entities
|
||||
total_entities_count += len(entities)
|
||||
processed_count += 1
|
||||
|
||||
# Update progress
|
||||
should_update = (
|
||||
processed_count % update_interval == 0 or
|
||||
processed_count == total_items or
|
||||
processed_count == 1 or
|
||||
total_items <= 10
|
||||
)
|
||||
if should_update:
|
||||
remaining = total_items - processed_count
|
||||
self.progress_tracker.update_progress(
|
||||
tracking_id,
|
||||
processed=processed_count,
|
||||
total=total_items,
|
||||
message=f"Processing documents... {processed_count}/{total_items} (remaining: {remaining}) - Extracted {total_entities_count} entities so far"
|
||||
)
|
||||
|
||||
self.progress_tracker.stop_tracking(
|
||||
tracking_id,
|
||||
|
||||
@@ -1183,28 +1183,88 @@ class HuggingFaceModelLoader:
|
||||
return [{"triplet": decoded}]
|
||||
|
||||
|
||||
def create_provider(name: str, **kwargs) -> BaseProvider:
|
||||
"""Create provider - checks registry for custom providers."""
|
||||
# Check registry first
|
||||
custom_provider = provider_registry.get(name)
|
||||
if custom_provider:
|
||||
return custom_provider(**kwargs)
|
||||
class ProviderPool:
|
||||
"""Pool for reusing provider instances."""
|
||||
|
||||
def __init__(self):
|
||||
self._providers: Dict[str, BaseProvider] = {}
|
||||
self.logger = get_logger("provider_pool")
|
||||
|
||||
# Built-in providers
|
||||
builtin = {
|
||||
"openai": OpenAIProvider,
|
||||
"gemini": GeminiProvider,
|
||||
"groq": GroqProvider,
|
||||
"anthropic": AnthropicProvider,
|
||||
"ollama": OllamaProvider,
|
||||
"huggingface_llm": HuggingFaceLLMProvider,
|
||||
"deepseek": DeepSeekProvider,
|
||||
}
|
||||
def get(self, name: str, **kwargs) -> BaseProvider:
|
||||
"""Get or create a provider instance."""
|
||||
# Create a cache key from name and kwargs
|
||||
# Filter out non-hashable items or volatile args if any
|
||||
# For now, we assume kwargs are configuration options that should match
|
||||
|
||||
# Helper to make dict hashable
|
||||
def make_hashable(value):
|
||||
if isinstance(value, dict):
|
||||
return tuple(sorted((k, make_hashable(v)) for k, v in value.items()))
|
||||
elif isinstance(value, list):
|
||||
return tuple(make_hashable(v) for v in value)
|
||||
return value
|
||||
|
||||
provider_class = builtin.get(name.lower())
|
||||
if not provider_class:
|
||||
raise ValueError(
|
||||
f"Unknown provider: {name}. Register custom provider or use built-in: {list(builtin.keys())}"
|
||||
)
|
||||
key_parts = [name]
|
||||
for k, v in sorted(kwargs.items()):
|
||||
# Skip some keys if they shouldn't affect pooling?
|
||||
# For now, all init args matter for the instance identity.
|
||||
key_parts.append((k, make_hashable(v)))
|
||||
|
||||
key = str(tuple(key_parts))
|
||||
|
||||
if key in self._providers:
|
||||
return self._providers[key]
|
||||
|
||||
self.logger.debug(f"Creating new provider instance for {name}")
|
||||
provider = self._create_provider(name, **kwargs)
|
||||
self._providers[key] = provider
|
||||
return provider
|
||||
|
||||
def _create_provider(self, name: str, **kwargs) -> BaseProvider:
|
||||
"""Internal creation logic."""
|
||||
# Check registry first
|
||||
custom_provider = provider_registry.get(name)
|
||||
if custom_provider:
|
||||
return custom_provider(**kwargs)
|
||||
|
||||
return provider_class(**kwargs)
|
||||
# Built-in providers
|
||||
builtin = {
|
||||
"openai": OpenAIProvider,
|
||||
"gemini": GeminiProvider,
|
||||
"groq": GroqProvider,
|
||||
"anthropic": AnthropicProvider,
|
||||
"ollama": OllamaProvider,
|
||||
"huggingface_llm": HuggingFaceLLMProvider,
|
||||
"deepseek": DeepSeekProvider,
|
||||
}
|
||||
|
||||
provider_class = builtin.get(name.lower())
|
||||
if not provider_class:
|
||||
raise ValueError(
|
||||
f"Unknown provider: {name}. Register custom provider or use built-in: {list(builtin.keys())}"
|
||||
)
|
||||
|
||||
return provider_class(**kwargs)
|
||||
|
||||
def clear(self):
|
||||
"""Clear the provider pool."""
|
||||
self._providers.clear()
|
||||
|
||||
|
||||
# Global provider pool
|
||||
_provider_pool = ProviderPool()
|
||||
|
||||
|
||||
def create_provider(name: str, use_pool: bool = True, **kwargs) -> BaseProvider:
|
||||
"""
|
||||
Create provider - checks registry for custom providers.
|
||||
|
||||
Args:
|
||||
name: Provider name
|
||||
use_pool: Whether to use the provider pool (default: True)
|
||||
**kwargs: Provider arguments
|
||||
"""
|
||||
if use_pool:
|
||||
return _provider_pool.get(name, **kwargs)
|
||||
|
||||
return _provider_pool._create_provider(name, **kwargs)
|
||||
|
||||
@@ -201,10 +201,12 @@ class RelationExtractor:
|
||||
)
|
||||
|
||||
try:
|
||||
results = []
|
||||
# Ensure lists are same length
|
||||
min_len = min(len(text), len(entities))
|
||||
results = [None] * min_len
|
||||
total_relations_count = 0
|
||||
processed_count = 0
|
||||
|
||||
# Update more frequently: every 1% or at least every 10 items, but always update for small datasets
|
||||
if min_len <= 10:
|
||||
update_interval = 1 # Update every item for small datasets
|
||||
@@ -212,58 +214,97 @@ class RelationExtractor:
|
||||
update_interval = max(1, min(10, min_len // 100))
|
||||
|
||||
# Initial progress update - ALWAYS show this
|
||||
remaining = min_len
|
||||
self.progress_tracker.update_progress(
|
||||
tracking_id,
|
||||
processed=0,
|
||||
total=min_len,
|
||||
message=f"Starting batch extraction... 0/{min_len} (remaining: {remaining})"
|
||||
message=f"Starting batch extraction... 0/{min_len}"
|
||||
)
|
||||
|
||||
for i in range(min_len):
|
||||
doc_item = text[i]
|
||||
ent_item = entities[i]
|
||||
|
||||
doc_text = ""
|
||||
if isinstance(doc_item, dict) and "content" in doc_item:
|
||||
doc_text = doc_item["content"]
|
||||
elif isinstance(doc_item, str):
|
||||
doc_text = doc_item
|
||||
else:
|
||||
doc_text = str(doc_item)
|
||||
|
||||
# Ensure ent_item is a list of entities
|
||||
if not isinstance(ent_item, list):
|
||||
ent_item = [] # Should not happen if entities is List[List[Entity]]
|
||||
|
||||
current_relations = self.extract_relations(doc_text, ent_item, **kwargs)
|
||||
|
||||
# Add provenance metadata
|
||||
for rel in current_relations:
|
||||
if rel.metadata is None:
|
||||
rel.metadata = {}
|
||||
rel.metadata["batch_index"] = i
|
||||
if isinstance(doc_item, dict) and "id" in doc_item:
|
||||
rel.metadata["document_id"] = doc_item["id"]
|
||||
# Determine max_workers
|
||||
max_workers = kwargs.get("max_workers", self.config.get("max_workers", 1))
|
||||
|
||||
results.append(current_relations)
|
||||
total_relations_count += len(current_relations)
|
||||
def process_item(i, doc_item, ent_item):
|
||||
try:
|
||||
doc_text = ""
|
||||
if isinstance(doc_item, dict) and "content" in doc_item:
|
||||
doc_text = doc_item["content"]
|
||||
elif isinstance(doc_item, str):
|
||||
doc_text = doc_item
|
||||
else:
|
||||
doc_text = str(doc_item)
|
||||
|
||||
# Ensure ent_item is a list of entities
|
||||
if not isinstance(ent_item, list):
|
||||
ent_item = [] # Should not happen if entities is List[List[Entity]]
|
||||
|
||||
current_relations = self.extract_relations(doc_text, ent_item, **kwargs)
|
||||
|
||||
# Add provenance metadata
|
||||
for rel in current_relations:
|
||||
if rel.metadata is None:
|
||||
rel.metadata = {}
|
||||
rel.metadata["batch_index"] = i
|
||||
if isinstance(doc_item, dict) and "id" in doc_item:
|
||||
rel.metadata["document_id"] = doc_item["id"]
|
||||
|
||||
return i, current_relations
|
||||
except Exception as e:
|
||||
self.logger.warning(f"Failed to process item {i}: {e}")
|
||||
return i, []
|
||||
|
||||
if max_workers > 1:
|
||||
import concurrent.futures
|
||||
|
||||
remaining = min_len - (i + 1)
|
||||
# Update progress: always update for small datasets, or at intervals for large ones
|
||||
should_update = (
|
||||
(i + 1) % update_interval == 0 or
|
||||
(i + 1) == min_len or
|
||||
i == 0 or
|
||||
min_len <= 10 # Always update for small datasets
|
||||
)
|
||||
if should_update:
|
||||
self.progress_tracker.update_progress(
|
||||
tracking_id,
|
||||
processed=i + 1,
|
||||
total=min_len,
|
||||
message=f"Processing documents... {i + 1}/{min_len} (remaining: {remaining}) - Extracted {total_relations_count} relations so far"
|
||||
with concurrent.futures.ThreadPoolExecutor(max_workers=max_workers) as executor:
|
||||
# Submit tasks
|
||||
future_to_idx = {
|
||||
executor.submit(process_item, i, text[i], entities[i]): i
|
||||
for i in range(min_len)
|
||||
}
|
||||
|
||||
for future in concurrent.futures.as_completed(future_to_idx):
|
||||
i, relations = future.result()
|
||||
results[i] = relations
|
||||
total_relations_count += len(relations)
|
||||
processed_count += 1
|
||||
|
||||
should_update = (
|
||||
processed_count % update_interval == 0 or
|
||||
processed_count == min_len or
|
||||
processed_count == 1 or
|
||||
min_len <= 10
|
||||
)
|
||||
if should_update:
|
||||
remaining = min_len - processed_count
|
||||
self.progress_tracker.update_progress(
|
||||
tracking_id,
|
||||
processed=processed_count,
|
||||
total=min_len,
|
||||
message=f"Processing documents... {processed_count}/{min_len} (remaining: {remaining}) - Extracted {total_relations_count} relations so far"
|
||||
)
|
||||
else:
|
||||
# Sequential processing
|
||||
for i in range(min_len):
|
||||
_, relations = process_item(i, text[i], entities[i])
|
||||
results[i] = relations
|
||||
total_relations_count += len(relations)
|
||||
processed_count += 1
|
||||
|
||||
should_update = (
|
||||
processed_count % update_interval == 0 or
|
||||
processed_count == min_len or
|
||||
processed_count == 1 or
|
||||
min_len <= 10
|
||||
)
|
||||
if should_update:
|
||||
remaining = min_len - processed_count
|
||||
self.progress_tracker.update_progress(
|
||||
tracking_id,
|
||||
processed=processed_count,
|
||||
total=min_len,
|
||||
message=f"Processing documents... {processed_count}/{min_len} (remaining: {remaining}) - Extracted {total_relations_count} relations so far"
|
||||
)
|
||||
|
||||
self.progress_tracker.stop_tracking(
|
||||
tracking_id,
|
||||
@@ -300,7 +341,7 @@ class RelationExtractor:
|
||||
Returns:
|
||||
list: List of extracted relations
|
||||
"""
|
||||
from .methods import get_relation_method
|
||||
from .methods import get_relation_method, match_entity
|
||||
|
||||
tracking_id = self.progress_tracker.start_tracking(
|
||||
module="semantic_extract",
|
||||
@@ -487,11 +528,9 @@ class RelationExtractor:
|
||||
self, text: str, entities: List[Entity]
|
||||
) -> List[Relation]:
|
||||
"""Extract relations using pattern matching."""
|
||||
from .methods import match_entity
|
||||
relations = []
|
||||
|
||||
# Create entity lookup by text
|
||||
entity_map = {e.text.lower(): e for e in entities}
|
||||
|
||||
# Check each relation pattern
|
||||
for relation_type, patterns in self.relation_patterns.items():
|
||||
for pattern in patterns:
|
||||
@@ -499,8 +538,8 @@ class RelationExtractor:
|
||||
subject_text = match.group("subject").strip()
|
||||
object_text = match.group("object").strip()
|
||||
|
||||
subject_entity = entity_map.get(subject_text.lower())
|
||||
object_entity = entity_map.get(object_text.lower())
|
||||
subject_entity = match_entity(subject_text, entities)
|
||||
object_entity = match_entity(object_text, entities)
|
||||
|
||||
if subject_entity and object_entity:
|
||||
# Get context around the match
|
||||
|
||||
@@ -41,6 +41,7 @@ print(f"Extracted {len(entities)} entities and {len(relations)} relations")
|
||||
All extractors support batch processing for high-throughput extraction. You can pass a list of strings or a list of dictionaries (with `content` and `id` keys).
|
||||
|
||||
**Features:**
|
||||
- **Parallel Processing**: Multi-threaded extraction for high throughput (control via `max_workers`).
|
||||
- **Progress Tracking**: Automatically shows a progress bar for large batches.
|
||||
- **Provenance Metadata**: Each extracted item includes `batch_index` and `document_id` in its `metadata`.
|
||||
|
||||
@@ -52,9 +53,13 @@ documents = [
|
||||
{"id": "doc_2", "content": "Microsoft Corporation was founded by Bill Gates."}
|
||||
]
|
||||
|
||||
extractor = NERExtractor()
|
||||
# Initialize with parallel processing enabled
|
||||
extractor = NERExtractor(max_workers=4)
|
||||
batch_results = extractor.extract(documents)
|
||||
|
||||
# OR override during extraction call
|
||||
# batch_results = extractor.extract(documents, max_workers=8)
|
||||
|
||||
for i, doc_entities in enumerate(batch_results):
|
||||
print(f"Document {i} entities:")
|
||||
for entity in doc_entities:
|
||||
|
||||
@@ -181,8 +181,9 @@ class SemanticNetworkExtractor:
|
||||
)
|
||||
|
||||
try:
|
||||
results = []
|
||||
results = [None] * len(text)
|
||||
total_items = len(text)
|
||||
processed_count = 0
|
||||
|
||||
# Determine update interval
|
||||
if total_items <= 10:
|
||||
@@ -198,54 +199,106 @@ class SemanticNetworkExtractor:
|
||||
message=f"Starting batch extraction... 0/{total_items} (remaining: {total_items})"
|
||||
)
|
||||
|
||||
for idx, item in enumerate(text):
|
||||
# Prepare arguments for single item
|
||||
doc_text = item["content"] if isinstance(item, dict) and "content" in item else str(item)
|
||||
|
||||
doc_entities = None
|
||||
if entities and isinstance(entities, list) and idx < len(entities):
|
||||
doc_entities = entities[idx]
|
||||
|
||||
doc_relations = None
|
||||
if relations and isinstance(relations, list) and idx < len(relations):
|
||||
doc_relations = relations[idx]
|
||||
# Determine max_workers
|
||||
max_workers = kwargs.get("max_workers", self.config.get("max_workers", 1))
|
||||
|
||||
# Extract
|
||||
network = self.extract_network(
|
||||
doc_text,
|
||||
entities=doc_entities,
|
||||
relations=doc_relations,
|
||||
**kwargs
|
||||
)
|
||||
|
||||
# Add provenance metadata to nodes and edges
|
||||
batch_meta = {"batch_index": idx}
|
||||
if isinstance(item, dict) and "id" in item:
|
||||
batch_meta["document_id"] = item["id"]
|
||||
|
||||
# Update network metadata
|
||||
network.metadata.update(batch_meta)
|
||||
|
||||
# Update nodes metadata
|
||||
for node in network.nodes:
|
||||
node.metadata.update(batch_meta)
|
||||
def process_item(idx, item, doc_entities, doc_relations):
|
||||
try:
|
||||
doc_text = item["content"] if isinstance(item, dict) and "content" in item else str(item)
|
||||
|
||||
# Update edges metadata
|
||||
for edge in network.edges:
|
||||
edge.metadata.update(batch_meta)
|
||||
|
||||
results.append(network)
|
||||
|
||||
# Update progress
|
||||
if (idx + 1) % update_interval == 0 or (idx + 1) == total_items:
|
||||
remaining = total_items - (idx + 1)
|
||||
self.progress_tracker.update_progress(
|
||||
tracking_id,
|
||||
processed=idx + 1,
|
||||
total=total_items,
|
||||
message=f"Processing... {idx + 1}/{total_items} (remaining: {remaining})"
|
||||
# Extract
|
||||
network = self.extract_network(
|
||||
doc_text,
|
||||
entities=doc_entities,
|
||||
relations=doc_relations,
|
||||
**kwargs
|
||||
)
|
||||
|
||||
# Add provenance metadata to nodes and edges
|
||||
batch_meta = {"batch_index": idx}
|
||||
if isinstance(item, dict) and "id" in item:
|
||||
batch_meta["document_id"] = item["id"]
|
||||
|
||||
# Update network metadata
|
||||
network.metadata.update(batch_meta)
|
||||
|
||||
# Update nodes metadata
|
||||
for node in network.nodes:
|
||||
node.metadata.update(batch_meta)
|
||||
|
||||
# Update edges metadata
|
||||
for edge in network.edges:
|
||||
edge.metadata.update(batch_meta)
|
||||
|
||||
return idx, network
|
||||
except Exception as e:
|
||||
self.logger.warning(f"Failed to process item {idx}: {e}")
|
||||
return idx, None
|
||||
|
||||
if max_workers > 1:
|
||||
import concurrent.futures
|
||||
|
||||
with concurrent.futures.ThreadPoolExecutor(max_workers=max_workers) as executor:
|
||||
# Submit tasks
|
||||
future_to_idx = {}
|
||||
for idx, item in enumerate(text):
|
||||
doc_entities = None
|
||||
if entities and isinstance(entities, list) and idx < len(entities):
|
||||
doc_entities = entities[idx]
|
||||
|
||||
doc_relations = None
|
||||
if relations and isinstance(relations, list) and idx < len(relations):
|
||||
doc_relations = relations[idx]
|
||||
|
||||
future = executor.submit(process_item, idx, item, doc_entities, doc_relations)
|
||||
future_to_idx[future] = idx
|
||||
|
||||
for future in concurrent.futures.as_completed(future_to_idx):
|
||||
idx, network = future.result()
|
||||
if network:
|
||||
results[idx] = network
|
||||
|
||||
processed_count += 1
|
||||
|
||||
# Update progress
|
||||
if (processed_count) % update_interval == 0 or (processed_count) == total_items:
|
||||
remaining = total_items - processed_count
|
||||
self.progress_tracker.update_progress(
|
||||
tracking_id,
|
||||
processed=processed_count,
|
||||
total=total_items,
|
||||
message=f"Processing... {processed_count}/{total_items} (remaining: {remaining})"
|
||||
)
|
||||
else:
|
||||
# Sequential processing
|
||||
for idx, item in enumerate(text):
|
||||
doc_entities = None
|
||||
if entities and isinstance(entities, list) and idx < len(entities):
|
||||
doc_entities = entities[idx]
|
||||
|
||||
doc_relations = None
|
||||
if relations and isinstance(relations, list) and idx < len(relations):
|
||||
doc_relations = relations[idx]
|
||||
|
||||
_, network = process_item(idx, item, doc_entities, doc_relations)
|
||||
if network:
|
||||
results[idx] = network
|
||||
|
||||
processed_count += 1
|
||||
|
||||
# Update progress
|
||||
if (processed_count) % update_interval == 0 or (processed_count) == total_items:
|
||||
remaining = total_items - processed_count
|
||||
self.progress_tracker.update_progress(
|
||||
tracking_id,
|
||||
processed=processed_count,
|
||||
total=total_items,
|
||||
message=f"Processing... {processed_count}/{total_items} (remaining: {remaining})"
|
||||
)
|
||||
|
||||
# Filter out None results if any failed
|
||||
results = [r for r in results if r is not None]
|
||||
|
||||
self.progress_tracker.stop_tracking(
|
||||
tracking_id,
|
||||
status="completed",
|
||||
|
||||
@@ -191,9 +191,10 @@ class TripletExtractor:
|
||||
)
|
||||
|
||||
try:
|
||||
results = []
|
||||
results = [None] * len(text)
|
||||
total_items = len(text)
|
||||
total_triplets_count = 0
|
||||
processed_count = 0
|
||||
|
||||
# Determine update interval
|
||||
if total_items <= 10:
|
||||
@@ -206,50 +207,87 @@ class TripletExtractor:
|
||||
tracking_id,
|
||||
processed=0,
|
||||
total=total_items,
|
||||
message=f"Starting batch extraction... 0/{total_items} (remaining: {total_items})"
|
||||
message=f"Starting batch extraction... 0/{total_items}"
|
||||
)
|
||||
|
||||
for idx, item in enumerate(text):
|
||||
# Prepare arguments for single item
|
||||
doc_text = item["content"] if isinstance(item, dict) and "content" in item else str(item)
|
||||
|
||||
doc_entities = None
|
||||
if entities and isinstance(entities, list) and idx < len(entities):
|
||||
doc_entities = entities[idx]
|
||||
|
||||
doc_relations = None
|
||||
if relations and isinstance(relations, list) and idx < len(relations):
|
||||
doc_relations = relations[idx]
|
||||
# Determine max_workers
|
||||
max_workers = kwargs.get("max_workers", self.config.get("max_workers", 1))
|
||||
|
||||
# Extract
|
||||
current_triplets = self.extract_triplets(
|
||||
doc_text,
|
||||
entities=doc_entities,
|
||||
relations=doc_relations,
|
||||
**kwargs
|
||||
)
|
||||
def process_item(idx, item):
|
||||
try:
|
||||
# Prepare arguments for single item
|
||||
doc_text = item["content"] if isinstance(item, dict) and "content" in item else str(item)
|
||||
|
||||
doc_entities = None
|
||||
if entities and isinstance(entities, list) and idx < len(entities):
|
||||
doc_entities = entities[idx]
|
||||
|
||||
doc_relations = None
|
||||
if relations and isinstance(relations, list) and idx < len(relations):
|
||||
doc_relations = relations[idx]
|
||||
|
||||
# Add provenance metadata
|
||||
for triplet in current_triplets:
|
||||
if triplet.metadata is None:
|
||||
triplet.metadata = {}
|
||||
triplet.metadata["batch_index"] = idx
|
||||
if isinstance(item, dict) and "id" in item:
|
||||
triplet.metadata["document_id"] = item["id"]
|
||||
|
||||
results.append(current_triplets)
|
||||
total_triplets_count += len(current_triplets)
|
||||
|
||||
# Update progress
|
||||
if (idx + 1) % update_interval == 0 or (idx + 1) == total_items:
|
||||
remaining = total_items - (idx + 1)
|
||||
self.progress_tracker.update_progress(
|
||||
tracking_id,
|
||||
processed=idx + 1,
|
||||
total=total_items,
|
||||
message=f"Processing... {idx + 1}/{total_items} (remaining: {remaining}) - Extracted {total_triplets_count} triplets"
|
||||
# Extract
|
||||
current_triplets = self.extract_triplets(
|
||||
doc_text,
|
||||
entities=doc_entities,
|
||||
relations=doc_relations,
|
||||
**kwargs
|
||||
)
|
||||
|
||||
# Add provenance metadata
|
||||
for triplet in current_triplets:
|
||||
if triplet.metadata is None:
|
||||
triplet.metadata = {}
|
||||
triplet.metadata["batch_index"] = idx
|
||||
if isinstance(item, dict) and "id" in item:
|
||||
triplet.metadata["document_id"] = item["id"]
|
||||
|
||||
return idx, current_triplets
|
||||
except Exception as e:
|
||||
self.logger.warning(f"Failed to process item {idx}: {e}")
|
||||
return idx, []
|
||||
|
||||
if max_workers > 1:
|
||||
import concurrent.futures
|
||||
|
||||
with concurrent.futures.ThreadPoolExecutor(max_workers=max_workers) as executor:
|
||||
# Submit tasks
|
||||
future_to_idx = {
|
||||
executor.submit(process_item, idx, item): idx
|
||||
for idx, item in enumerate(text)
|
||||
}
|
||||
|
||||
for future in concurrent.futures.as_completed(future_to_idx):
|
||||
idx, triplets = future.result()
|
||||
results[idx] = triplets
|
||||
total_triplets_count += len(triplets)
|
||||
processed_count += 1
|
||||
|
||||
if processed_count % update_interval == 0 or processed_count == total_items:
|
||||
remaining = total_items - processed_count
|
||||
self.progress_tracker.update_progress(
|
||||
tracking_id,
|
||||
processed=processed_count,
|
||||
total=total_items,
|
||||
message=f"Processing... {processed_count}/{total_items} (remaining: {remaining}) - Extracted {total_triplets_count} triplets"
|
||||
)
|
||||
else:
|
||||
# Sequential processing
|
||||
for idx, item in enumerate(text):
|
||||
_, triplets = process_item(idx, item)
|
||||
results[idx] = triplets
|
||||
total_triplets_count += len(triplets)
|
||||
processed_count += 1
|
||||
|
||||
if processed_count % update_interval == 0 or processed_count == total_items:
|
||||
remaining = total_items - processed_count
|
||||
self.progress_tracker.update_progress(
|
||||
tracking_id,
|
||||
processed=processed_count,
|
||||
total=total_items,
|
||||
message=f"Processing... {processed_count}/{total_items} (remaining: {remaining}) - Extracted {total_triplets_count} triplets"
|
||||
)
|
||||
|
||||
self.progress_tracker.stop_tracking(
|
||||
tracking_id,
|
||||
status="completed",
|
||||
|
||||
@@ -0,0 +1,378 @@
|
||||
|
||||
import unittest
|
||||
import time
|
||||
import os
|
||||
from dotenv import load_dotenv
|
||||
|
||||
load_dotenv()
|
||||
|
||||
from semantica.semantic_extract.ner_extractor import NERExtractor
|
||||
from semantica.semantic_extract.relation_extractor import RelationExtractor
|
||||
from semantica.semantic_extract.triplet_extractor import TripletExtractor
|
||||
from semantica.semantic_extract.event_detector import EventDetector
|
||||
from semantica.semantic_extract.semantic_network_extractor import SemanticNetworkExtractor
|
||||
from semantica.semantic_extract.methods import _result_cache
|
||||
|
||||
class TestGroqRealWorldPerformance(unittest.TestCase):
|
||||
"""
|
||||
Real-world performance test suite using Groq LLM.
|
||||
Tests parallel processing, caching, and correctness.
|
||||
"""
|
||||
|
||||
@classmethod
|
||||
def setUpClass(cls):
|
||||
cls.api_key = os.getenv("GROQ_API_KEY")
|
||||
if not cls.api_key:
|
||||
raise unittest.SkipTest("GROQ_API_KEY is not set")
|
||||
cls.metrics_file = os.path.join(os.getcwd(), "groq_metrics.txt")
|
||||
|
||||
# Real-world sample texts (mix of tech, business, and general)
|
||||
cls.sample_texts = [
|
||||
"""Apple Inc. is planning to launch a new AI-powered iPhone in late 2024.
|
||||
CEO Tim Cook announced that the device will feature a neural engine capable of
|
||||
processing 50 trillion operations per second. The company's stock rose 5% following the news.""",
|
||||
|
||||
"""Microsoft Corporation has acquired Activision Blizzard for $68.7 billion.
|
||||
Satya Nadella, Microsoft's Chairman and CEO, stated that this acquisition will
|
||||
accelerate growth in Microsoft's gaming business across mobile, PC, console, and cloud.""",
|
||||
|
||||
"""Elon Musk's SpaceX successfully launched the Starship rocket from Boca Chica, Texas.
|
||||
The mission aims to test new heat shield technology essential for future Mars missions.
|
||||
NASA Administrator Bill Nelson congratulated the team on the achievement.""",
|
||||
|
||||
"""Google DeepMind introduced Gemini, a new multimodal AI model.
|
||||
Sundar Pichai emphasized that Gemini represents a significant leap forward in
|
||||
AI capabilities, outperforming GPT-4 on several benchmarks including MMLU.""",
|
||||
|
||||
"""Amazon Web Services (AWS) announced a partnership with Anthropic to develop
|
||||
reliable and high-performance foundation models. Amazon is investing up to $4 billion
|
||||
in the AI safety startup founded by Dario Amodei."""
|
||||
]
|
||||
|
||||
# Warm up: Ensure modules are loaded
|
||||
print("\n[Setup] Initializing extractors...")
|
||||
cls.extractor = NERExtractor(
|
||||
method="llm",
|
||||
provider="groq",
|
||||
llm_model="llama-3.3-70b-versatile",
|
||||
api_key=cls.api_key,
|
||||
)
|
||||
cls.relation_extractor = RelationExtractor(
|
||||
method="llm",
|
||||
provider="groq",
|
||||
llm_model="llama-3.3-70b-versatile",
|
||||
api_key=cls.api_key,
|
||||
)
|
||||
cls.triplet_extractor = TripletExtractor(
|
||||
method="llm",
|
||||
provider="groq",
|
||||
llm_model="llama-3.3-70b-versatile",
|
||||
api_key=cls.api_key,
|
||||
)
|
||||
cls.event_detector = EventDetector(
|
||||
method="llm",
|
||||
provider="groq",
|
||||
llm_model="llama-3.3-70b-versatile",
|
||||
api_key=cls.api_key,
|
||||
)
|
||||
cls.network_extractor = SemanticNetworkExtractor(
|
||||
method="llm",
|
||||
provider="groq",
|
||||
llm_model="llama-3.3-70b-versatile",
|
||||
api_key=cls.api_key,
|
||||
)
|
||||
|
||||
def setUp(self):
|
||||
# Clear cache before specific performance tests to ensure fair comparison
|
||||
# (Unless testing cache specifically)
|
||||
if _result_cache:
|
||||
_result_cache._caches["entities"].clear()
|
||||
_result_cache._caches["relations"].clear()
|
||||
|
||||
def log_metrics(self, message):
|
||||
print(message)
|
||||
with open(self.metrics_file, "a") as f:
|
||||
f.write(message + "\n")
|
||||
f.flush()
|
||||
|
||||
def test_01_parallel_vs_sequential_performance(self):
|
||||
"""Compare sequential vs parallel extraction speed."""
|
||||
try:
|
||||
self.log_metrics("\n" + "="*60)
|
||||
self.log_metrics("TEST 1: Sequential vs Parallel Processing Performance")
|
||||
self.log_metrics("="*60)
|
||||
|
||||
extractor = NERExtractor(method="llm", provider="groq", api_key=self.api_key, model="llama-3.3-70b-versatile")
|
||||
|
||||
# 1. Sequential Run (Max workers = 1)
|
||||
self.log_metrics("\nStarting Sequential Extraction (5 documents)...")
|
||||
start_time = time.time()
|
||||
seq_results = extractor.extract(self.sample_texts, max_workers=1)
|
||||
seq_time = time.time() - start_time
|
||||
self.log_metrics(f"Sequential Time: {seq_time:.4f}s")
|
||||
self.log_metrics(f"Average Latency: {seq_time/len(self.sample_texts):.4f}s per doc")
|
||||
|
||||
# Clear cache to force re-extraction for parallel test
|
||||
_result_cache._caches["entities"].clear()
|
||||
|
||||
# 2. Parallel Run (Max workers = 5)
|
||||
self.log_metrics("\nStarting Parallel Extraction (5 documents, 5 workers)...")
|
||||
start_time = time.time()
|
||||
par_results = extractor.extract(self.sample_texts, max_workers=5)
|
||||
par_time = time.time() - start_time
|
||||
self.log_metrics(f"Parallel Time: {par_time:.4f}s")
|
||||
self.log_metrics(f"Average Latency: {par_time/len(self.sample_texts):.4f}s per doc")
|
||||
|
||||
# Analysis
|
||||
speedup = seq_time / par_time if par_time > 0 else 0
|
||||
self.log_metrics(f"\n>>> Performance Gain: {speedup:.2f}x speedup")
|
||||
self.log_metrics(f">>> Latency Reduction: {(seq_time - par_time):.4f}s total time saved")
|
||||
|
||||
self.assertLess(par_time, seq_time * 1.35, "Parallel processing should not be significantly slower")
|
||||
self.assertEqual(len(seq_results), len(self.sample_texts))
|
||||
self.assertEqual(len(par_results), len(self.sample_texts))
|
||||
except Exception as e:
|
||||
self.log_metrics(f"ERROR in Test 1: {e}")
|
||||
raise
|
||||
|
||||
def test_02_caching_latency_reduction(self):
|
||||
"""Measure latency reduction from caching."""
|
||||
try:
|
||||
self.log_metrics("\n" + "="*60)
|
||||
self.log_metrics("TEST 2: Caching Performance & Latency Reduction")
|
||||
self.log_metrics("="*60)
|
||||
|
||||
extractor = NERExtractor(method="llm", provider="groq", api_key=self.api_key, model="llama-3.3-70b-versatile")
|
||||
text = [self.sample_texts[0]]
|
||||
|
||||
# 1. Cold Cache
|
||||
_result_cache._caches["entities"].clear()
|
||||
self.log_metrics("\nCold Cache Request...")
|
||||
start_time = time.time()
|
||||
extractor.extract(text)
|
||||
cold_time = time.time() - start_time
|
||||
self.log_metrics(f"Cold Cache Time: {cold_time:.4f}s")
|
||||
cache_size_after_cold = _result_cache.get_stats()["entities"]["size"]
|
||||
|
||||
# 2. Warm Cache
|
||||
self.log_metrics("\nWarm Cache Request (Identical Query)...")
|
||||
start_time = time.time()
|
||||
extractor.extract(text)
|
||||
warm_time = time.time() - start_time
|
||||
self.log_metrics(f"Warm Cache Time: {warm_time:.6f}s")
|
||||
cache_size_after_warm = _result_cache.get_stats()["entities"]["size"]
|
||||
|
||||
# Analysis
|
||||
reduction = (cold_time - warm_time) / cold_time * 100
|
||||
self.log_metrics(f"\n>>> Latency Reduction: {reduction:.2f}%")
|
||||
|
||||
self.assertLess(warm_time, 1.0, "Warm cache response should be fast (<1.0s)")
|
||||
# self.assertGreater(reduction, 50, "Caching should reduce latency by >50%")
|
||||
if reduction < 30:
|
||||
self.log_metrics(f"WARNING: Caching reduction is low ({reduction:.2f}%)")
|
||||
self.assertGreater(reduction, 20, "Caching should reduce latency by >20%")
|
||||
self.assertGreater(cache_size_after_cold, 0, "Cache should store entity results")
|
||||
self.assertEqual(cache_size_after_warm, cache_size_after_cold, "Warm request should hit the cache")
|
||||
except Exception as e:
|
||||
self.log_metrics(f"ERROR in Test 2: {e}")
|
||||
raise
|
||||
|
||||
def test_03_correctness_and_entity_matching(self):
|
||||
"""Verify extraction correctness and data quality."""
|
||||
try:
|
||||
self.log_metrics("\n" + "="*60)
|
||||
self.log_metrics("TEST 3: Extraction Correctness & Data Quality")
|
||||
self.log_metrics("="*60)
|
||||
|
||||
# Use a specific text with clear entities
|
||||
text = "Satya Nadella is the CEO of Microsoft."
|
||||
|
||||
extractor = NERExtractor(method="llm", provider="groq", api_key=self.api_key, model="llama-3.3-70b-versatile")
|
||||
entities = extractor.extract([text])[0] # List of lists
|
||||
|
||||
self.log_metrics(f"\nInput: {text}")
|
||||
self.log_metrics(f"Extracted Entities: {[e.text + '(' + e.label + ')' for e in entities]}")
|
||||
|
||||
# Validation
|
||||
found_person = any(e.label == "PERSON" and "Satya" in e.text for e in entities)
|
||||
found_org = any(e.label == "ORG" and "Microsoft" in e.text for e in entities)
|
||||
|
||||
if not found_org:
|
||||
self.log_metrics("FAILURE: Did not find Microsoft as ORG. Found entities:")
|
||||
for e in entities:
|
||||
self.log_metrics(f" - {e.text}: {e.label}")
|
||||
|
||||
self.assertTrue(found_person, "Failed to extract Satya Nadella as PERSON")
|
||||
self.assertTrue(found_org, "Failed to extract Microsoft as ORG")
|
||||
|
||||
self.log_metrics("\n>>> Correctness Verification: PASS")
|
||||
self.log_metrics(" - Identified PERSON entity")
|
||||
self.log_metrics(" - Identified ORG entity")
|
||||
self.log_metrics(" - Pydantic models validated successfully")
|
||||
except Exception as e:
|
||||
self.log_metrics(f"ERROR in Test 3: {e}")
|
||||
raise
|
||||
|
||||
def test_4_relation_extraction(self):
|
||||
"""Test Relation Extraction capabilities"""
|
||||
print("\n" + "="*60)
|
||||
print("TEST 4: Relation Extraction")
|
||||
print("="*60)
|
||||
|
||||
text = self.sample_texts[1] # Microsoft acquisition text
|
||||
print(f"\nInput: {text[:100]}...")
|
||||
|
||||
# First extract entities
|
||||
entities = self.__class__.extractor.extract_entities(text)
|
||||
self.assertTrue(len(entities) > 0, "Should extract entities first")
|
||||
|
||||
# Extract relations
|
||||
start_time = time.time()
|
||||
relations = self.__class__.relation_extractor.extract_relations(text, entities)
|
||||
duration = time.time() - start_time
|
||||
|
||||
print(f"Extracted {len(relations)} relations in {duration:.4f}s")
|
||||
for r in relations:
|
||||
print(f" - {r.subject.text} -> {r.predicate} -> {r.object.text}")
|
||||
|
||||
self.assertTrue(len(relations) > 0, "Should extract relations")
|
||||
|
||||
# Verify specific relation (Microsoft -> acquired -> Activision Blizzard)
|
||||
found_acquisition = False
|
||||
for r in relations:
|
||||
if "Microsoft" in r.subject.text and "Activision" in r.object.text:
|
||||
found_acquisition = True
|
||||
break
|
||||
|
||||
if not found_acquisition:
|
||||
# Fallback check - sometimes subject/object might be swapped or different wording
|
||||
for r in relations:
|
||||
if "Activision" in r.subject.text and "Microsoft" in r.object.text:
|
||||
found_acquisition = True
|
||||
break
|
||||
|
||||
self.assertTrue(found_acquisition, "Should find acquisition relation between Microsoft and Activision")
|
||||
|
||||
def test_5_triplet_extraction(self):
|
||||
"""Test RDF Triplet Extraction capabilities"""
|
||||
print("\n" + "="*60)
|
||||
print("TEST 5: Triplet Extraction")
|
||||
print("="*60)
|
||||
|
||||
text = self.sample_texts[0] # Apple text
|
||||
print(f"\nInput: {text[:100]}...")
|
||||
|
||||
# Pipeline: Entities -> Relations -> Triplets
|
||||
entities = self.__class__.extractor.extract_entities(text)
|
||||
relations = self.__class__.relation_extractor.extract_relations(text, entities)
|
||||
|
||||
start_time = time.time()
|
||||
triplets = self.__class__.triplet_extractor.extract_triplets(text, entities, relations)
|
||||
duration = time.time() - start_time
|
||||
|
||||
print(f"Extracted {len(triplets)} triplets in {duration:.4f}s")
|
||||
for t in triplets:
|
||||
print(f" - <{t.subject}> <{t.predicate}> <{t.object}>")
|
||||
|
||||
self.assertTrue(len(triplets) > 0, "Should extract triplets")
|
||||
|
||||
# Check for Apple related triplet
|
||||
found_apple = False
|
||||
for t in triplets:
|
||||
if "Apple" in t.subject or "Apple" in t.object:
|
||||
found_apple = True
|
||||
break
|
||||
self.assertTrue(found_apple, "Should find Apple-related triplet")
|
||||
|
||||
def test_6_event_detection(self):
|
||||
"""Test Event Detection capabilities"""
|
||||
print("\n" + "="*60)
|
||||
print("TEST 6: Event Detection")
|
||||
print("="*60)
|
||||
|
||||
text = self.sample_texts[2] # SpaceX launch text
|
||||
print(f"\nInput: {text[:100]}...")
|
||||
|
||||
start_time = time.time()
|
||||
events = self.__class__.event_detector.detect_events(text)
|
||||
duration = time.time() - start_time
|
||||
|
||||
print(f"Detected {len(events)} events in {duration:.4f}s")
|
||||
for e in events:
|
||||
print(f" - [{e.event_type}] {e.text} (Participants: {e.participants})")
|
||||
|
||||
self.assertTrue(len(events) > 0, "Should detect events")
|
||||
|
||||
# Verify launch event
|
||||
found_launch = False
|
||||
for e in events:
|
||||
if "launch" in e.event_type.lower() or "launch" in e.text.lower():
|
||||
found_launch = True
|
||||
break
|
||||
self.assertTrue(found_launch, "Should detect launch event")
|
||||
|
||||
def test_7_semantic_network(self):
|
||||
"""Test Semantic Network Extraction capabilities"""
|
||||
print("\n" + "="*60)
|
||||
print("TEST 7: Semantic Network Extraction")
|
||||
print("="*60)
|
||||
|
||||
text = self.sample_texts[3] # Google DeepMind text
|
||||
print(f"\nInput: {text[:100]}...")
|
||||
|
||||
# Extract base components first
|
||||
entities = self.__class__.extractor.extract_entities(text)
|
||||
relations = self.__class__.relation_extractor.extract_relations(text, entities)
|
||||
|
||||
start_time = time.time()
|
||||
network = self.__class__.network_extractor.extract_network(text, entities=entities, relations=relations)
|
||||
duration = time.time() - start_time
|
||||
|
||||
print(f"Extracted Network in {duration:.4f}s")
|
||||
print(f" - Nodes: {len(network.nodes)}")
|
||||
print(f" - Edges: {len(network.edges)}")
|
||||
|
||||
self.assertTrue(len(network.nodes) > 0, "Should have nodes")
|
||||
self.assertTrue(len(network.edges) > 0, "Should have edges")
|
||||
|
||||
# Verify Google/DeepMind/Gemini nodes exist
|
||||
node_labels = [n.label for n in network.nodes]
|
||||
print(f" - Node Labels: {node_labels}")
|
||||
self.assertTrue(any("Gemini" in l for l in node_labels), "Should contain Gemini node")
|
||||
|
||||
def test_8_parallel_event_detection(self):
|
||||
"""Test Parallel Event Detection capabilities"""
|
||||
print("\n" + "="*60)
|
||||
print("TEST 8: Parallel Event Detection")
|
||||
print("="*60)
|
||||
|
||||
# Create a larger batch by duplicating sample texts
|
||||
batch_texts = self.sample_texts * 2 # 10 documents
|
||||
|
||||
# 1. Sequential Run
|
||||
print("\nStarting Sequential Event Detection (10 documents)...")
|
||||
start_time = time.time()
|
||||
seq_results = self.__class__.event_detector.extract(batch_texts, max_workers=1)
|
||||
seq_time = time.time() - start_time
|
||||
print(f"Sequential Time: {seq_time:.4f}s")
|
||||
|
||||
# 2. Parallel Run
|
||||
print("\nStarting Parallel Event Detection (10 documents, 5 workers)...")
|
||||
start_time = time.time()
|
||||
par_results = self.__class__.event_detector.extract(batch_texts, max_workers=5)
|
||||
par_time = time.time() - start_time
|
||||
print(f"Parallel Time: {par_time:.4f}s")
|
||||
|
||||
# Analysis
|
||||
speedup = seq_time / par_time if par_time > 0 else 0
|
||||
print(f"\n>>> Performance Gain: {speedup:.2f}x speedup")
|
||||
|
||||
self.assertEqual(len(seq_results), len(batch_texts))
|
||||
self.assertEqual(len(par_results), len(batch_texts))
|
||||
|
||||
# Verify results match (order should be preserved)
|
||||
for i in range(len(batch_texts)):
|
||||
self.assertEqual(len(seq_results[i]), len(par_results[i]), f"Result count mismatch at index {i}")
|
||||
|
||||
if __name__ == "__main__":
|
||||
unittest.main()
|
||||
@@ -0,0 +1,262 @@
|
||||
import time
|
||||
import unittest
|
||||
print("Starting tests module...")
|
||||
from unittest.mock import MagicMock, patch
|
||||
from semantica.semantic_extract.providers import create_provider, ProviderPool, _provider_pool
|
||||
from semantica.semantic_extract.ner_extractor import NERExtractor
|
||||
from semantica.semantic_extract.relation_extractor import RelationExtractor
|
||||
from semantica.semantic_extract.triplet_extractor import TripletExtractor, Triplet
|
||||
from semantica.semantic_extract.methods import _result_cache, extract_entities_llm, extract_relations_llm, extract_triplets_llm, match_entity
|
||||
from semantica.semantic_extract.ner_extractor import Entity
|
||||
|
||||
class TestSemanticExtractImprovements(unittest.TestCase):
|
||||
def setUp(self):
|
||||
_provider_pool.clear()
|
||||
# Clear cache before each test
|
||||
if _result_cache:
|
||||
_result_cache._caches["entities"].clear()
|
||||
_result_cache._caches["relations"].clear()
|
||||
_result_cache._caches["triplets"].clear()
|
||||
|
||||
def test_entity_matching(self):
|
||||
print("\nTesting Entity Matching...")
|
||||
entities = [
|
||||
Entity(text="Apple Inc.", label="ORG", start_char=0, end_char=10, confidence=1.0),
|
||||
Entity(text="Steve Jobs", label="PERSON", start_char=0, end_char=10, confidence=1.0)
|
||||
]
|
||||
|
||||
# Exact match
|
||||
m1 = match_entity("Apple Inc.", entities)
|
||||
self.assertIsNotNone(m1)
|
||||
self.assertEqual(m1.text, "Apple Inc.")
|
||||
|
||||
# Case insensitive
|
||||
m2 = match_entity("apple inc.", entities)
|
||||
self.assertIsNotNone(m2)
|
||||
self.assertEqual(m2.text, "Apple Inc.")
|
||||
|
||||
# Substring/Partial match (should work via calculate_similarity)
|
||||
# "Apple" is contained in "Apple Inc."
|
||||
# calculate_similarity gives a boost for containment
|
||||
m3 = match_entity("Apple", entities)
|
||||
if m3:
|
||||
self.assertEqual(m3.text, "Apple Inc.")
|
||||
print(" Partial match 'Apple' -> 'Apple Inc.' successful.")
|
||||
else:
|
||||
print(" Partial match 'Apple' -> 'Apple Inc.' failed (score too low).")
|
||||
|
||||
# No match
|
||||
m4 = match_entity("Microsoft", entities)
|
||||
self.assertIsNone(m4)
|
||||
print(" No match verified.")
|
||||
|
||||
# Synonym match
|
||||
# We need entities that match the synonym keys in methods.py (e.g. "acquired" -> "bought")
|
||||
# Let's create an entity "bought"
|
||||
rel_entities = [Entity(text="bought", label="RELATION", start_char=0, end_char=6, confidence=1.0)]
|
||||
m5 = match_entity("acquired", rel_entities)
|
||||
self.assertIsNotNone(m5)
|
||||
self.assertEqual(m5.text, "bought")
|
||||
print(" Synonym match 'acquired' -> 'bought' verified.")
|
||||
|
||||
# Empty input
|
||||
m6 = match_entity("", entities)
|
||||
self.assertIsNone(m6)
|
||||
print(" Empty input handled.")
|
||||
|
||||
def test_caching(self):
|
||||
print("\nTesting Caching...")
|
||||
|
||||
text = "Apple Inc. was founded in 1976."
|
||||
|
||||
# Mock provider
|
||||
mock_provider = MagicMock()
|
||||
mock_provider.is_available.return_value = True
|
||||
# Setup mock response for entities
|
||||
mock_entities_response = MagicMock()
|
||||
mock_entities_response.entities = [
|
||||
MagicMock(text="Apple Inc.", label="ORG", confidence=0.9),
|
||||
MagicMock(text="1976", label="DATE", confidence=0.9)
|
||||
]
|
||||
mock_provider.generate_typed.return_value = mock_entities_response
|
||||
|
||||
with patch('semantica.semantic_extract.methods.create_provider', return_value=mock_provider) as mock_create:
|
||||
# First call - should hit provider
|
||||
print(" First call (cache miss)...")
|
||||
results1 = extract_entities_llm(text, provider="openai", model="gpt-4", api_key="test")
|
||||
self.assertEqual(len(results1), 2)
|
||||
self.assertEqual(mock_provider.generate_typed.call_count, 1)
|
||||
|
||||
# Check cache state
|
||||
print(f" Cache size: {len(_result_cache._caches['entities'])}")
|
||||
|
||||
# Second call - should hit cache
|
||||
print(" Second call (cache hit)...")
|
||||
results2 = extract_entities_llm(text, provider="openai", model="gpt-4", api_key="test")
|
||||
self.assertEqual(len(results2), 2)
|
||||
# Provider should NOT be called again
|
||||
self.assertEqual(mock_provider.generate_typed.call_count, 1)
|
||||
|
||||
print(" Cache hit verified for entities.")
|
||||
|
||||
# Verify cache content
|
||||
self.assertIn("entities", _result_cache._caches)
|
||||
self.assertTrue(len(_result_cache._caches["entities"]) > 0)
|
||||
|
||||
def test_provider_pool(self):
|
||||
print("\nTesting Provider Pool...")
|
||||
# Create provider twice with same args
|
||||
# We need to mock the actual provider init to avoid API keys requirement if not present
|
||||
with patch('semantica.semantic_extract.providers.OpenAIProvider') as MockProvider:
|
||||
MockProvider.side_effect = lambda *args, **kwargs: MagicMock()
|
||||
|
||||
p1 = create_provider("openai", api_key="test", model_name="gpt-4")
|
||||
p2 = create_provider("openai", api_key="test", model_name="gpt-4")
|
||||
|
||||
# Should be same instance
|
||||
self.assertIs(p1, p2)
|
||||
print(" Provider reuse verified.")
|
||||
|
||||
# Different args
|
||||
p3 = create_provider("openai", api_key="test", model_name="gpt-3.5")
|
||||
self.assertIsNot(p1, p3)
|
||||
print(" Different args create new instance verified.")
|
||||
|
||||
# Explicitly not using pool
|
||||
p4 = create_provider("openai", use_pool=False, api_key="test", model_name="gpt-4")
|
||||
self.assertIsNot(p1, p4)
|
||||
print(" Opt-out of pool verified.")
|
||||
|
||||
def test_ner_parallel_processing(self):
|
||||
print("\nTesting NER Parallel Processing...")
|
||||
extractor = NERExtractor(method="pattern") # Use pattern which is fast/local
|
||||
|
||||
# Mock extract_entities to simulate work and track thread execution
|
||||
original_extract = extractor.extract_entities
|
||||
|
||||
def mock_extract(text, **kwargs):
|
||||
time.sleep(0.1) # Simulate delay
|
||||
return original_extract(text, **kwargs)
|
||||
|
||||
extractor.extract_entities = mock_extract
|
||||
|
||||
texts = ["Text 1", "Text 2", "Text 3", "Text 4"]
|
||||
|
||||
start_time = time.time()
|
||||
# Run with 2 workers
|
||||
results = extractor.extract(texts, max_workers=2)
|
||||
end_time = time.time()
|
||||
|
||||
duration = end_time - start_time
|
||||
print(f" Parallel NER (2 workers) took {duration:.4f}s")
|
||||
|
||||
self.assertEqual(len(results), 4)
|
||||
|
||||
# Verify sequential fallback
|
||||
start_time_seq = time.time()
|
||||
extractor.extract(texts, max_workers=1)
|
||||
end_time_seq = time.time()
|
||||
duration_seq = end_time_seq - start_time_seq
|
||||
print(f" Sequential NER took {duration_seq:.4f}s")
|
||||
|
||||
# Check if parallel was indeed parallel (faster)
|
||||
# With 0.1s sleep * 4 items:
|
||||
# Sequential ~ 0.4s
|
||||
# Parallel (2 workers) ~ 0.2s + overhead
|
||||
self.assertLess(duration, duration_seq * 0.8)
|
||||
print(" Parallel execution speedup verified.")
|
||||
|
||||
def test_relation_parallel_processing(self):
|
||||
print("\nTesting Relation Parallel Processing...")
|
||||
extractor = RelationExtractor(method="pattern")
|
||||
|
||||
# Mock extract_relations
|
||||
original_extract = extractor.extract_relations
|
||||
def mock_extract(text, entities, **kwargs):
|
||||
time.sleep(0.1)
|
||||
return original_extract(text, entities, **kwargs)
|
||||
extractor.extract_relations = mock_extract
|
||||
|
||||
texts = ["Text 1", "Text 2", "Text 3", "Text 4"]
|
||||
entities = [[], [], [], []]
|
||||
|
||||
start_time = time.time()
|
||||
results = extractor.extract(texts, entities, max_workers=2)
|
||||
end_time = time.time()
|
||||
|
||||
duration = end_time - start_time
|
||||
print(f" Parallel RE (2 workers) took {duration:.4f}s")
|
||||
|
||||
self.assertEqual(len(results), 4)
|
||||
|
||||
# Sequential
|
||||
start_time_seq = time.time()
|
||||
extractor.extract(texts, entities, max_workers=1)
|
||||
end_time_seq = time.time()
|
||||
duration_seq = end_time_seq - start_time_seq
|
||||
print(f" Sequential RE took {duration_seq:.4f}s")
|
||||
|
||||
self.assertLess(duration, duration_seq * 0.8)
|
||||
print(" Parallel execution speedup verified.")
|
||||
|
||||
def test_relation_extraction_fuzzy_matching(self):
|
||||
print("\nTesting Relation Extraction Fuzzy Matching...")
|
||||
extractor = RelationExtractor(method="pattern")
|
||||
|
||||
# Entities have formal names
|
||||
entities = [
|
||||
Entity(text="Apple Inc.", label="ORG", start_char=0, end_char=10, confidence=1.0),
|
||||
Entity(text="Steve Jobs", label="PERSON", start_char=21, end_char=31, confidence=1.0)
|
||||
]
|
||||
|
||||
# Text uses informal name "Apple"
|
||||
text = "Apple was founded by Steve Jobs."
|
||||
|
||||
relations = extractor.extract(text, entities)
|
||||
|
||||
found = False
|
||||
for rel in relations:
|
||||
# Check if subject matches "Apple Inc." even though text said "Apple"
|
||||
if rel.subject.text == "Apple Inc." and rel.object.text == "Steve Jobs" and rel.predicate == "founded_by":
|
||||
found = True
|
||||
print(" Successfully matched 'Apple' -> 'Apple Inc.' in relation extraction.")
|
||||
break
|
||||
|
||||
self.assertTrue(found, "Failed to extract relation with fuzzy entity matching")
|
||||
|
||||
def test_triplet_parallel_processing(self):
|
||||
print("\nTesting Triplet Parallel Processing...")
|
||||
extractor = TripletExtractor(method="pattern")
|
||||
|
||||
# Mock extract_triplets
|
||||
original_extract = extractor.extract_triplets
|
||||
def mock_extract(text, **kwargs):
|
||||
time.sleep(0.1)
|
||||
# Return dummy triplets to avoid actual extraction overhead
|
||||
return [Triplet(subject="s", predicate="p", object="o")]
|
||||
extractor.extract_triplets = mock_extract
|
||||
|
||||
texts = ["Text 1", "Text 2", "Text 3", "Text 4"]
|
||||
|
||||
start_time = time.time()
|
||||
results = extractor.extract(texts, max_workers=2)
|
||||
end_time = time.time()
|
||||
|
||||
duration = end_time - start_time
|
||||
print(f" Parallel TE (2 workers) took {duration:.4f}s")
|
||||
|
||||
self.assertEqual(len(results), 4)
|
||||
|
||||
# Sequential
|
||||
start_time_seq = time.time()
|
||||
extractor.extract(texts, max_workers=1)
|
||||
end_time_seq = time.time()
|
||||
duration_seq = end_time_seq - start_time_seq
|
||||
print(f" Sequential TE took {duration_seq:.4f}s")
|
||||
|
||||
self.assertLess(duration, duration_seq * 0.8)
|
||||
print(" Parallel execution speedup verified.")
|
||||
|
||||
if __name__ == "__main__":
|
||||
suite = unittest.TestLoader().loadTestsFromTestCase(TestSemanticExtractImprovements)
|
||||
unittest.TextTestRunner(verbosity=2).run(suite)
|
||||
Reference in New Issue
Block a user