Commit Graph
2488 Commits
Author SHA1 Message Date
Mohd Kaif 4820185924 Merge branch 'main' into codex/harden-markdown-import-symlinks 2026-08-23 16:55:43 +05:30
Mohd Kaif 7e1d2550b9 Merge pull request #996 from varunsahni18/fix/issue-994-embed-fallback-recursion-corrupt-output
fix: prevent fallback recursion and write proper Parquet in embed generate command (fixes #994)
2026-08-23 16:08:25 +05:30
KaifAhmad1 f124df4229 fix: prevent duplicate dimension kwarg crash in create_index
vector_store_config.get_all() always includes a "dimension" key, so
forwarding it via **config into VectorIndexer(dimension=dimension, **config)
raised "got multiple values for keyword argument 'dimension'" any time the
default index-creation path ran with the default config — including
`semantica embed index`, which is exactly the second half of the #994
quick-start pipeline this PR fixes.
2026-08-23 15:51:25 +05:30
Sameer6305 a47954c19a Merge main into fix/issue-994-embed-fallback-recursion-corrupt-output 2026-08-23 14:35:22 +05:30
Mohd Kaif 1ee2ae88a7 Merge pull request #1187 from ALDRIN121/fix/1184-causal-edge-vocabulary
fix(context): accept analyzer vocabulary in causal edges
2026-08-22 23:01:31 +05:30
Mohd Kaif 93e4b97517 Merge branch 'main' into fix/1184-causal-edge-vocabulary 2026-08-22 22:57:04 +05:30
dependabot[bot]anddependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 48f219cd5c deps(deps): bump google-genai from 2.17.0 to 2.18.1 (#1163)
Bumps [google-genai](https://github.com/googleapis/python-genai) from 2.17.0 to 2.18.1.
- [Release notes](https://github.com/googleapis/python-genai/releases)
- [Changelog](https://github.com/googleapis/python-genai/blob/main/CHANGELOG.md)
- [Commits](https://github.com/googleapis/python-genai/compare/v2.17.0...v2.18.1)

---
updated-dependencies:
- dependency-name: google-genai
  dependency-version: 2.18.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-08-22 22:43:30 +05:30
dependabot[bot]anddependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 331c857672 security(deps): bump agno from 2.8.7 to 2.9.0 (#1050)
Bumps [agno](https://github.com/agno-agi/agno) from 2.8.7 to 2.9.0.
- [Release notes](https://github.com/agno-agi/agno/releases)
- [Commits](https://github.com/agno-agi/agno/compare/v2.8.7...v2.9.0)

---
updated-dependencies:
- dependency-name: agno
  dependency-version: 2.9.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-08-22 22:36:28 +05:30
dependabot[bot]anddependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 727b0383cc security(deps): bump botocore from 1.43.69 to 1.43.73 (#1047)
Bumps [botocore](https://github.com/boto/botocore) from 1.43.69 to 1.43.73.
- [Commits](https://github.com/boto/botocore/compare/1.43.69...1.43.73)

---
updated-dependencies:
- dependency-name: botocore
  dependency-version: 1.43.71
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-08-22 22:34:54 +05:30
Aldrin Joseph 248ae57694 fix(context): extend causal vocabulary normalization to sibling methods (#1184)
Review feedback: analyze_decision_influence(), trace_decision_causality(),
and find_precedents() had the same vocabulary split as get_causal_chain().
The first two read edge_type_index, which is keyed by the RAW edge_type
string, so they now filter index keys by normalized type; find_precedents()
accepts the analyzer's 'precedes' spelling alongside PRECEDENT_FOR.
Adds regression tests for all three call sites.
2026-08-22 22:06:31 +05:30
Mohd Kaif ba3737c878 Merge pull request #1189 from mikemikimike/feat/public-shacl-validation
feat(ontology): expose public SHACL validation API
2026-08-22 22:01:07 +05:30
Mohd Kaif e3b24ef872 Merge branch 'main' into feat/public-shacl-validation 2026-08-22 21:54:34 +05:30
mikemikimike b891902d6d test(shacl): compare stable report fields 2026-08-23 00:15:41 +08:00
Nitish Reddy M 9123dcc0bd fix(export): mint JSON-LD document @id from content, not the clock (#1181)
Closes #1147
2026-08-22 21:14:17 +05:00
mikemikimike 6cbe0ae438 test(shacl): cover conforming validation result 2026-08-23 00:13:12 +08:00
mikemikimike fe3baad67c docs(shacl): correct legacy alias name 2026-08-23 00:02:57 +08:00
mikemikimike 7efc66d0e3 Merge branch 'main' into feat/public-shacl-validation 2026-08-23 00:01:27 +08:00
mikemikimike 50f2f82b95 feat(ontology): expose public SHACL validation API 2026-08-22 23:58:00 +08:00
d3f37f798e Fix HuggingFace NER kwargs handling (#1188)
Co-authored-by: Shahzaib Ahmad <malikshahzaib7145@example.com>
Co-authored-by: Zohaib Hassnain <109234410+ZohaibHassan16@users.noreply.github.com>
2026-08-22 20:56:15 +05:00
Mohd Kaif 5cd79b6436 Merge branch 'main' into fix/1184-causal-edge-vocabulary 2026-08-22 21:17:47 +05:30
Aldrin Joseph 3c99f447e6 docs(shacl): document that rdfs:range + RDFS entailment makes sh:class unfalsifiable (#1182)
* docs(shacl): warn that rdfs:range makes sh:class unfalsifiable under entailment (#1130)

* docs(shacl): self-contained pitfall example, sh:node coverage, and wrapper clarifications (#1130)
2026-08-22 19:12:56 +05:00
Saurabh Meena e2f850e9e4 Merge remote-tracking branch 'origin/main' into codex/harden-markdown-import-symlinks 2026-08-22 19:38:20 +05:30
Aldrin Joseph 2d976963ab fix(context): keep ValueError for non-string causal relationship types (#1184)
Review feedback: normalization must not turn invalid inputs into
AttributeError. Non-string relationship types now raise ValueError before
normalization, matching the pre-change behavior; strings are stripped
before alias lookup.
2026-08-22 16:40:21 +05:30
Aldrin Joseph 283b7ada0c fix(context): accept analyzer vocabulary in causal edges (#1184)
get_causal_chain() matched only the canonical uppercase spellings
(CAUSED, INFLUENCED, PRECEDENT_FOR), while CausalChainAnalyzer's
vocabulary includes the present-tense forms (causes, influences,
leads_to, supports) — and the two differ in word form, not just case,
so case-insensitive matching alone would still miss them. An edge
recorded as "causes" produced an empty audit chain.

Storage normalizes both vocabularies onto the canonical types via
_CAUSAL_EDGE_ALIASES; traversal accepts the union (_CAUSAL_TRAVERSAL_TYPES).
add_causal_relationship() now accepts either spelling and stores the
canonical form.
2026-08-22 16:40:21 +05:30
Mohd Kaif 483f53aaa6 fix(tests): use exact-equality check to clear CodeQL substring-URL false positive (#1183)
CodeQL (py/incomplete-url-substring-sanitization) flagged the "https://schema.org/"
in flattened check because it pattern-matches on URL-ish strings tested with `in`.
flattened is always a list here, so the check was already exact membership, not a
substring test on untrusted input, but the ambiguous idiom tripped the scanner.
Rewrite as an explicit equality comparison so the intent is unambiguous.
2026-08-22 15:12:52 +05:30
cxzg007and江俊杰 14091d21fb fix(kg): compute real relationship duration for temporal stability metric (#1143)
analyze_evolution() previously appended a constant placeholder (durations.append(1)) for every bounded relationship, so the stability metric was always 1.0 when any bounded relationship existed and 0 otherwise, never reflecting actual valid-time durations.

Stability now computes the mean valid-time duration in seconds ((valid_until - valid_from).total_seconds()) across relationships with both bounds set; unbounded/half-open intervals are skipped and non-positive intervals clamped to 0. Adds unit tests and a CHANGELOG entry.

Co-authored-by: 江俊杰 <jiangjunjie.37@jd.com>
2026-08-22 14:24:47 +05:00
Kevin 58125a0a93 fix(dedup): never merge entities with different explicit types (closes #1137) (#1149)
* fix(dedup): never merge entities with different explicit types (fixes #1137)

The duplicate candidate confidence scoring only rewarded same-type pairs
but never penalized different-type pairs, so a Person 'Alice' and an
Organization 'Acme' (different id, type, and name) passed the confidence
threshold and were merged, silently dropping one entity. Add a type guard:
when both entities carry a non-empty type and they differ, the pair is
never a duplicate candidate (confidence 0, reason 'type_mismatch').

Untyped entities and genuinely duplicate same-type pairs keep their
previous behavior. Regression tests cover all three cases.

* fix(dedup): honor Entity.type and exclude mismatch structurally (review fixes)

Two gaps from code review (#1149):

1. _get_entity_value mapped object 'type' exclusively to .label, which
   Entity objects never have — their type lives on .type. The mismatch
   guard therefore never saw the type of Entity objects, and differently
   typed objects could still merge. Read .type first, fall back to .label.

2. The mismatch branch returned a normal candidate with confidence 0.0,
   but detection filters with >= confidence_threshold, and 0.0 is a
   documented valid threshold, so mismatches slipped through. Exclude
   type_mismatch candidates structurally at both filter sites regardless
   of threshold.

Adds tests for Entity objects with different types and for
confidence_threshold=0.0. 94 dedup tests pass.

---------
2026-08-22 14:13:45 +05:00
Aldrin JosephandClaude 394ce5fe61 fix(reasoning): refuse SPARQL query execution instead of returning empty results (#1087)
* fix(reasoning): refuse SPARQL query execution instead of returning empty results (#1083)

SPARQLReasoner.execute_query() never executed the query: both branches
returned an empty SPARQLQueryResult, with or without a triplet store, so
callers that trust an empty result as "no matches" silently drew wrong
conclusions. Until a real triplet-store execution path lands, the method
raises NotImplementedError with an explanation, per the issue's
suggestion. The dead cache/inference scaffolding after the execution
point is removed along with it.

Co-Authored-By: Claude <noreply@anthropic.com>

* docs(reasoning): align execute_query() docs with the NotImplementedError contract (#1087)

Review feedback: the docstring still carried a "Returns" section and the
reasoning guide showed execute_query() returning bindings, both of which
now mislead. The docstring documents Raises only, the guide demonstrates
expand_query() and points to rdflib for execution until the triplet-store
path lands, and query_cache/clear_cache() are marked as reserved for that
future execution path.

Co-Authored-By: Claude <noreply@anthropic.com>

---------

Co-authored-by: Claude <noreply@anthropic.com>
2026-08-22 14:00:28 +05:00
Aldrin JosephandClaude 8e9f7c5526 fix(utils): bound caller-controlled keys in validation error messages (#1088)
* fix(utils): bound caller-controlled keys in validation error messages (#1001)

_require_recognized_keys() and _require_nothing_dropped() interpolated
supplied keys directly into ValidationError messages, so a megabyte-long
key produced a megabyte-long exception and, through the export wrappers
that log the full exception, an equally large log entry. Keys are now
rendered through _truncate_key(), which bounds the display at 64
characters with an ellipsis; the supplied payload is never modified.

Co-Authored-By: Claude <noreply@anthropic.com>

* fix(utils): bound the count of keys shown in validation error messages (#1001)

Review feedback: per-key truncation did not bound the number of keys
shown, so a payload carrying many short unknown keys could still size the
message (and the log entry that records it). _truncate_key_list() caps
the display at 8 keys and appends "and N more", keeping the message
actionable without letting the payload size it.

Co-Authored-By: Claude <noreply@anthropic.com>

---------

Co-authored-by: Claude <noreply@anthropic.com>
2026-08-22 13:52:56 +05:00
hari d4fdc1f0d3 fix(normalize): accept unit aliases during conversion (#939)
Convert_units() was validating categories on raw input like "kg" or "ft"
instead of the normalized unit name, so aliases got checked against a
category list that only has canonical names in it. Any alias-based
conversion that should've worked just raised ValidationError instead.

Fixed by normalizing both units before the category check runs.

Also added foot/yard/mile/gallon to the alias map - they already had
conversion factors but weren't mapped to their canonical names, so they'd
still have failed even after the above fix.

Turned out there was a second bug hiding behind the first one: the category
check defaults both sides to None, and None == None is True, so two aliases
from different categories that neither resolved to a real category would
silently pass instead of raising. kg -> ft would just return a number
instead of erroring. Normalizing first fixes this too, since aliases now
resolve to their actual categories and the mismatch gets caught.

Added a regression test locking that second one down - kg->ft and gal->lb
now raise ValidationError instead of silently converting.

Fixes #931.
2026-08-22 13:30:35 +05:00
Dwiti Thaker 729f4fe932 fix(docker): use Python 3.13 for gensim compatibility (#1172)
Docker build was broken on python:3.14-slim because gensim doesn't ship a
3.14 wheel yet (typical of bleeding edge Python), so pip
tries to compile it from source and there's no gcc in the slim image.

gensim's a core dependency  so every build hit this.

Went back to 3.13 instead of installing a compiler : simpler, and 3.14 was
just a jump from an automated bump PR anyway.

Fixes #1025.
2026-08-22 13:21:45 +05:00
Mohd Kaif 5c6b40f36c Merge pull request #1116 from T1mn/fix/kg-validator-entity-id
fix(kg): validate entity_id aliases
2026-08-21 19:38:24 +05:30
Mohd Kaif 6390652303 Merge branch 'main' into fix/kg-validator-entity-id 2026-08-21 19:33:26 +05:30
Mohd Kaif 1b21fc4cbb Merge pull request #1145 from fabio-rovai/jsonld-default-graph
Keep JSON-LD payloads in the default graph (#1144)
2026-08-21 19:21:11 +05:30
Mohd Kaif 719efa4794 Merge branch 'main' into jsonld-default-graph 2026-08-21 19:15:39 +05:30
Saurabh Meena db0a9e8bfd Merge remote-tracking branch 'origin/main' into codex/harden-markdown-import-symlinks 2026-08-21 18:58:46 +05:30
Mohd Kaif 46451ae2e1 Merge pull request #1127 from fabio-rovai/custom-methods-can-refuse
Let a registered custom method refuse (#1108)
2026-08-21 18:56:45 +05:30
Saurabh Meena 5b01949dd8 Merge remote-tracking branch 'origin/main' into codex/harden-markdown-import-symlinks 2026-08-21 18:51:26 +05:30
Mohd Kaif 4b312ca2fa Merge branch 'main' into custom-methods-can-refuse 2026-08-21 18:39:51 +05:30
Saurabh Meena 363a9ad641 Merge upstream main into codex/harden-markdown-import-symlinks 2026-08-21 18:38:52 +05:30
Saurabh Meena 560ffef59f fix(context): reject Markdown junction imports 2026-08-21 18:35:03 +05:30
Mohd Kaif a279e74468 Merge pull request #1126 from fabio-rovai/owl-time-reachable-interval
Give the OWL-Time interval a subject the graph can reach (#1106)
2026-08-21 18:21:41 +05:30
Mohd Kaif 6653cbe879 Merge branch 'main' into owl-time-reachable-interval 2026-08-21 18:16:52 +05:30
Mohd Kaif 0dc26350f9 Merge pull request #1125 from fabio-rovai/confidence-literal-typing
Write confidence as one typed decimal on every serialization path (#1100, #1102)
2026-08-21 18:06:05 +05:30
Mohd Kaif 3063bf8096 Merge branch 'main' into confidence-literal-typing 2026-08-21 17:30:10 +05:30
Mohd Kaif cbb0a6dd8e Merge pull request #1124 from fabio-rovai/shacl-targets-and-domains
Target the namespace the data uses, and stop attaching domain-less properties to every class (#1104, #1105)
2026-08-21 17:28:07 +05:30
Mohd Kaif a46be971e6 Merge branch 'main' into shacl-targets-and-domains 2026-08-21 17:16:47 +05:30
Mohd Kaif e3405ebc23 Merge pull request #1123 from fabio-rovai/owl-exporter-ontology-schema
Read the ontology shape the generator actually emits, and stop minting empty class IRIs (#1103)
2026-08-21 17:13:07 +05:30
Mohd Kaif 0ee38c2d99 Merge branch 'main' into owl-exporter-ontology-schema 2026-08-21 17:01:48 +05:30
Guofang.Tang a3074ec454 fix(kg): keep relationship endpoint aliases in sync (#1115)
* fix(kg): keep relationship endpoint aliases in sync

* fix(kg): repair stale endpoint aliases

* test(kg): cover stale endpoint aliases

---------
2026-08-21 13:35:43 +05:00