Zheng Feng 9905e4321d fix(mcp): repair extraction handlers and pipeline serialization (#1535) ...

Fix runtime crashes and serialization defects across the packaged MCP extraction
handlers in semantica_mcp/mcp/tools/extraction.py.

* fix(mcp): use public named entity extraction API
  - Replace non-existent NamedEntityRecognizer.extract() with extract_entities()
  - Preserve original input text to prevent entity character offset coordinate drift
  - Fixes #1533

* fix(mcp): correct extraction pipeline serialization
  - Map Relation fields (subject, predicate, object) to MCP keys (source, type, target)
  - Retain coreference chains in result["coreferences"] instead of passing to text extractors
  - Fixes #1534

* fix(mcp): serialize event fields correctly
  - Map Event dataclass fields (event_type, text) to MCP keys (type, trigger)
  - Add regression tests covering entity offsets, relations, coreferences, and events

2026-09-10 20:43:13 +05:00

..

change_management

fix: address named-graph review findings

2026-04-02 18:10:11 +05:30

conflicts

fix(config): honor boolean env overrides in Config.get() (#1038)

2026-08-27 16:33:09 +05:00

context

fix(context): stamp AgentMemory in aware UTC, not mixed naive conventions (#1073)

2026-09-10 15:16:35 +05:30

cookbook

fix(kg): resolve 'unhashable type: Entity' in GraphAnalyzer #159

2026-01-08 17:23:31 +05:30

core

fix(kg): resolve 'unhashable type: Entity' in GraphAnalyzer #159

2026-01-08 17:23:31 +05:30

deduplication

fix(utils): write console progress to stderr instead of stdout

2026-08-29 13:53:48 +01:00

embeddings

fix: resolve model switching bug and implement intrinsic dimension detection in TextEmbedder

2026-01-08 18:56:42 +05:30

evals

feat(evals): add per-metric objective support to runner (closes #1091) (#1092)

2026-09-02 18:47:28 +05:30

explorer

fix(explorer): resolve ontology ownership on the backend for entity deep links (#1439)

2026-09-09 23:39:39 +05:30

export

fix(export): @vocab mints into the shipped ns# namespace (#1236)

2026-08-28 19:53:35 +05:00

graph_store

Address review: string-only application id resolution

2026-08-22 02:07:55 +08:00

ingest

fix(deps): address review feedback on import exceptions and probes (#1513)

2026-09-08 01:27:42 +05:00

integration

Fix LLM relation extraction parsing and add tests

2026-01-16 01:19:33 +05:30

integrations

This is resubmit of the pr for issue feat(integrations): add Google ADK support (#1312)

2026-09-04 15:34:48 +05:00

kg

fix(kg): promote synthetic relation endpoints into the graph (#1464)

2026-09-07 00:39:03 +05:30

normalize

fix(normalize): accept unit aliases during conversion (#939)

2026-08-22 13:30:35 +05:00

ontology

Merge branch 'main' into codex/ontology-quality-gate

2026-09-04 00:34:54 +08:00

parse

fix(parse): warn when PDF parse yields no text layer (scanned PDFs) (#1021)

2026-08-27 16:51:04 +05:30

pipeline

fix(pipeline): set_parallelism now enables dependency-layer parallel execution (closes #1223) (#1226)

2026-08-28 12:33:39 +05:00

provenance

test(provenance): assert stored records in KG provenance suites (#946) (#1132)

2026-08-27 15:40:38 +05:00

reasoning

Merge remote-tracking branch 'origin/main' into fix/rete-pattern-matching

2026-08-29 21:50:04 +05:30

seed

test(seed): use a real file for CSV loading (#873)

2026-08-12 17:43:10 +05:30

semantic_extract

feat(semantic_extract): schema-guided validation — SchemaValidator + ExtractionSchema (PR 1/3) (#1527)

2026-09-08 20:02:17 +05:00

split

fix: replace mutable default arguments with None + in-body defaults (#1068)

2026-09-03 13:18:03 +05:30

triplet_store

fix(triplet_store): OxigraphStore silently ignores storage_path; add_triplets skips flush (#970)

2026-08-25 15:57:31 +05:30

utils

test(utils): restore both module bindings in the progress fixture

2026-08-29 15:00:04 +01:00

vector_store

fix(vector-store): train PQ indexes in FAISSIndexBuilder

2026-09-10 16:45:58 +08:00

visualization

fix(deps): address review feedback on slim core dependencies (#1513)

2026-09-07 20:32:00 +05:00

__init__.py

fix(kg): resolve 'unhashable type: Entity' in GraphAnalyzer #159

2026-01-08 17:23:31 +05:30

_smoke_review_fixes.py

fix(explorer): make distance intelligence API calls slash-safe

2026-04-29 21:17:36 +05:00

test_030_context_graph_realworld_extended.py

test(export): guard Parquet tests on pyarrow itself, not the exporter import (#1056)

2026-08-18 02:18:39 +05:00

test_030_realworld_comprehensive.py

Improve context explainability outputs

2026-03-13 06:31:38 +05:30

test_395_temporal_semantics_comprehensive.py

fix: correct three test failures in unreleased changelog test suite

2026-04-07 17:42:08 +05:30

test_401_temporal_provenance_export.py

feat(#401): Temporal Provenance & Export (#411)

2026-03-26 12:38:24 +05:30

test_all_features.py

fix(kg): resolve 'unhashable type: Entity' in GraphAnalyzer #159

2026-01-08 17:23:31 +05:30

test_amazon_neptune.py

feat: Add Amazon Neptune Database Graph Store Support

2026-01-08 20:13:28 -05:00

test_arango_aql_exporter.py

fix: rename contributing/license pages to avoid Mintlify reserved slug conflict

2026-05-23 00:14:23 +05:30

test_arrow_exporter.py

feat: add Apache Arrow exporter

2026-02-02 22:56:53 +05:30

test_cli_commands.py

Merge branch 'main' into slim-core-dependencies

2026-09-08 11:56:58 +05:30

test_cli_foundation.py

Fix CLI demo blockers

2026-06-16 04:43:45 +05:00

test_databricks_ingestor.py

Fix OAuth M2M auth using credentials_provider instead of unsupported client_id/client_secret kwargs for sql.connect() (addresses Codex P1)

2026-07-16 20:11:58 +05:30

test_embedding_providers.py

fix(embeddings): stop the registry dispatch from calling wrappers back into themselves (#1005)

2026-08-27 01:18:03 +05:30

test_export_methods_wrapper.py

fix(kg): resolve 'unhashable type: Entity' in GraphAnalyzer #159

2026-01-08 17:23:31 +05:30

test_export_module.py

fix(cli): align export dispatch with registry contract

2026-05-29 23:45:29 +05:30

test_extractors_dispatch.py

test: install extractor dispatch mocks per test, not at module scope (#1337)

2026-09-02 15:31:38 +05:30

test_graph_store_methods.py

security: sanitize Cypher labels/relationship types/property keys (GHSA-482h) (#910)

2026-08-11 16:24:28 +05:30

test_graph_store.py

security: sanitize Cypher labels/relationship types/property keys (GHSA-482h) (#910)

2026-08-11 16:24:28 +05:30

test_groq_integration.py

fix(kg): resolve 'unhashable type: Entity' in GraphAnalyzer #159

2026-01-08 17:23:31 +05:30

test_hf_deep_verify.py

feat: enhance Hugging Face integration with robust BYOM support and improved triplet/relation extraction

2026-01-27 21:55:22 +05:30

test_huggingface_impl.py

feat: enhance semantic extraction with BYOM support, NER aggregation, RE implementation, and Triplet improvements

2026-01-24 20:53:21 +05:30

test_import.py

fix(kg): resolve 'unhashable type: Entity' in GraphAnalyzer #159

2026-01-08 17:23:31 +05:30

test_issue_554_fixes.py

fix(providers): address review feedback on PR #556 + changelog

2026-05-15 20:00:44 +05:30

test_issue_1513_slim_core.py

Fix/parse and qdrant vector store (#1508)

2026-09-08 15:47:05 +05:30

test_llm_anthropic.py

fix(llms): replace retired default model and tidy Anthropic wrapper

2026-08-30 13:33:18 +05:30

test_llm_deepseek.py

feat(llms): add Gemini, Ollama, DeepSeek, Novita provider wrappers (#1262)

2026-08-30 17:00:14 +05:30

test_llm_extraction_fixes.py

Fix critical test issues and add JenaStore empty graph tests

2026-02-02 23:50:00 +05:30

test_llm_gemini.py

test(gemini): regression tests for per-call model override

2026-09-06 18:16:23 +05:30

test_llm_novita.py

feat(llms): add Gemini, Ollama, DeepSeek, Novita provider wrappers (#1262)

2026-08-30 17:00:14 +05:30

test_llm_ollama.py

feat(llms): add Gemini, Ollama, DeepSeek, Novita provider wrappers (#1262)

2026-08-30 17:00:14 +05:30

test_mcp_decisions_causal_chain.py

This is resubmit of the pr for issue feat(integrations): add Google ADK support (#1312)

2026-09-04 15:34:48 +05:00

test_mcp_package_call_tool.py

fix(cli): dispatch mcp call through semantica_mcp.mcp.server (#1368)

2026-09-08 02:40:53 +05:00

test_mcp_package_export_graph.py

This is resubmit of the pr for issue feat(integrations): add Google ADK support (#1312)

2026-09-04 15:34:48 +05:00

test_mcp_package_export_graphml_parquet.py

fix(mcp): repair GraphML and Parquet exports (#1367)

2026-09-08 18:48:57 +05:00

test_mcp_package_extraction.py

fix(mcp): repair extraction handlers and pipeline serialization (#1535)

2026-09-10 20:43:13 +05:00

test_mcp_package_persistence.py

This is resubmit of the pr for issue feat(integrations): add Google ADK support (#1312)

2026-09-04 15:34:48 +05:00

test_mcp_package_version.py

This is resubmit of the pr for issue feat(integrations): add Google ADK support (#1312)

2026-09-04 15:34:48 +05:00

test_mcp_semantic_retrieval.py

feat(mcp): semantic retrieval tools (store, retrieve, update, remove) (#1250)

2026-09-07 17:30:34 +05:00

test_mcp_server_export_graph.py

fix(mcp): reject unsupported export_graph formats instead of mislabeling JSON

2026-08-25 16:18:33 +05:30

test_mcp_server_version.py

fix(mcp): use semantica.__version__ as authoritative MCP version source

2026-08-12 13:56:02 +05:30

test_mcp_stdio_roundtrip.py

fix(cli): dispatch mcp call through semantica_mcp.mcp.server (#1368)

2026-09-08 02:40:53 +05:00

test_model_selection.py

chore: Prepare release v0.2.0

2026-01-10 23:32:10 +05:30

test_ner_configurations.py

fix(ner): add explicit ensemble merge strategies

2026-08-31 11:40:48 -04:00

test_notebook_15_export.py

fix(kg): resolve 'unhashable type: Entity' in GraphAnalyzer #159

2026-01-08 17:23:31 +05:30

test_notebooks_plain.py

fix(kg): resolve 'unhashable type: Entity' in GraphAnalyzer #159

2026-01-08 17:23:31 +05:30

test_notebooks_repro.py

fix(kg): resolve 'unhashable type: Entity' in GraphAnalyzer #159

2026-01-08 17:23:31 +05:30

test_notebooks_simulation.py

fix(kg): resolve 'unhashable type: Entity' in GraphAnalyzer #159

2026-01-08 17:23:31 +05:30

test_notebooks_verification.py

fix(kg): resolve 'unhashable type: Entity' in GraphAnalyzer #159

2026-01-08 17:23:31 +05:30

test_novita_integration.py

fix: correct Entity import path in test_novita_integration

2026-03-18 00:17:08 +05:30

test_parquet_exporter.py

fix: rename contributing/license pages to avoid Mintlify reserved slug conflict

2026-05-23 00:14:23 +05:30

test_pipeline_orchestration.py

fix(kg): resolve 'unhashable type: Entity' in GraphAnalyzer #159

2026-01-08 17:23:31 +05:30

test_plugin_manifest.py

fix(plugins): declare agents as an array of file paths in plugin.json

2026-09-01 17:02:52 +08:00

test_progress_tracker_regressions.py

fix(utils): write console progress only to an interactive stdout

2026-08-23 22:17:31 +05:30

test_pyproject_extras.py

Fix/parse and qdrant vector store (#1508)

2026-09-08 15:47:05 +05:30

test_relations_llm.py

Fix LLM relation extraction parsing and add tests

2026-01-16 01:19:33 +05:30

test_reproduce_issue_176.py

Add tests for max_tokens propagation in LLM methods (#925)

2026-08-26 14:50:50 +05:30

test_resource_scheduler_deadlock.py

fix: use RLock in ResourceScheduler to prevent deadlock

2026-02-10 12:22:16 +05:30

test_salesforce_ingestor.py

feat(ingest): add production-ready Salesforce ingestor (#1240)

2026-08-29 12:55:37 +05:00

test_security_regression_pr2.py

fix(security): header injection, link-prediction DoS, import ID sanitization (#912)

2026-08-12 21:14:55 +05:30

test_security_regression.py

test: scope the security-regression guard to the SPARQL class, guard the new decision-route test

2026-08-29 13:27:42 +01:00

test_seed_manager.py

fix(memory): find_by_entity returns all matches by default (#1024)

2026-08-29 14:09:40 +05:30

test_semantic_extract_batch_provenance.py

chore: Prepare release v0.2.0

2026-01-10 23:32:10 +05:30

test_semantic_extract_deepdive_part2.py

fix(kg): resolve 'unhashable type: Entity' in GraphAnalyzer #159

2026-01-08 17:23:31 +05:30

test_semantic_extract_deepdive.py

fix(kg): resolve 'unhashable type: Entity' in GraphAnalyzer #159

2026-01-08 17:23:31 +05:30

test_semantic_extract_triplets.py

fix(kg): resolve 'unhashable type: Entity' in GraphAnalyzer #159

2026-01-08 17:23:31 +05:30

test_snowflake_ingestor.py

fix: address Copilot review feedback for Snowflake ingestor

2026-02-04 00:17:25 +05:30

test_spacy_cache_bounds_and_locks.py

fix: replace bare except with except Exception in 3 sites (#1069)

2026-09-10 13:53:55 +05:30

test_unreleased_changelog_comprehensive.py

fix: correct three test failures in unreleased changelog test suite

2026-04-07 17:42:08 +05:30

verify_backends.py

fix(kg): resolve 'unhashable type: Entity' in GraphAnalyzer #159

2026-01-08 17:23:31 +05:30

verify_context_sync.py

fix(kg): resolve 'unhashable type: Entity' in GraphAnalyzer #159

2026-01-08 17:23:31 +05:30

verify_rich_cli.py

fix(cli): resolve JSON spinner leakage and cleanup review findings

2026-06-04 16:57:00 +05:30